Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 AL450345.1-202ENST00000605741 3881 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL4A4P53420 AC017019.1-201ENST00000426129 261 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 AC004975.1-201ENST00000428733 208 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.51□□□□□ -1.53
COL4A4P53420 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.51□□□□□ -1.53
COL4A4P53420 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.51□□□□□ -1.53
COL4A4P53420 AC013356.1-201ENST00000489027 564 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 RN7SL604P-201ENST00000492589 296 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.51□□□□□ -1.53
COL4A4P53420 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.51□□□□□ -1.53
COL4A4P53420 SNORA70.11-201ENST00000515987 138 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 SNORA70.13-201ENST00000516116 138 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 RN7SKP260-201ENST00000516907 149 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.51□□□□□ -1.53
COL4A4P53420 AC019193.2-201ENST00000610012 634 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.51□□□□□ -1.53
COL4A4P53420 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.51□□□□□ -1.53
COL4A4P53420 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.51□□□□□ -1.53
COL4A4P53420 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 AC100871.1-201ENST00000507871 1456 ntBASIC5.51□□□□□ -1.53
COL4A4P53420 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.51□□□□□ -1.53
COL4A4P53420 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL4A4P53420 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL4A4P53420 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 AP005432.1-201ENST00000580891 3485 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 SNORA70.6-201ENST00000383934 134 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 MIR600-201ENST00000385007 98 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 HSPA8P15-201ENST00000401676 786 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 RPL17P36-201ENST00000420302 549 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AC004074.1-201ENST00000421810 1063 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.5□□□□□ -1.53
COL4A4P53420 OR7E125P-201ENST00000443450 846 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 TXNP2-201ENST00000443918 295 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 AC103987.1-201ENST00000473394 348 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 RN7SKP122-201ENST00000515923 296 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.5□□□□□ -1.53
COL4A4P53420 AC008033.2-201ENST00000542626 177 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AC008147.3-201ENST00000548666 354 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.5□□□□□ -1.53
COL4A4P53420 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC5.5□□□□□ -1.53
COL4A4P53420 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 AC092376.2-201ENST00000622621 4116 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL4A4P53420 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 SNORA66-201ENST00000384792 133 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 HMGB3P7-201ENST00000400214 611 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 RNU4-25P-201ENST00000410569 230 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.5□□□□□ -1.53
COL4A4P53420 GTF2IP2-201ENST00000424290 697 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AC239367.2-201ENST00000447309 705 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.5□□□□□ -1.53
COL4A4P53420 AC091180.1-201ENST00000462104 372 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.5□□□□□ -1.53
COL4A4P53420 AC097173.1-201ENST00000505862 819 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.5□□□□□ -1.53
COL4A4P53420 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.5□□□□□ -1.53
COL4A4P53420 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL4A4P53420 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.5□□□□□ -1.53
COL4A4P53420 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 MIR4675-201ENST00000577898 77 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 BNIP3P22-201ENST00000593399 556 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 AL034374.2-201ENST00000605281 548 ntBASIC5.5□□□□□ -1.53
COL4A4P53420 uc_338.7-201ENST00000621834 124 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms