Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
MSX1P28360 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 RN7SKP117-201ENST00000410175 264 ntBASIC6.97□□□□□ -1.29
MSX1P28360 RN7SKP236-201ENST00000410635 284 ntBASIC6.97□□□□□ -1.29
MSX1P28360 RNU6-195P-201ENST00000411352 109 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 AL450992.3-201ENST00000413192 568 ntBASIC6.97□□□□□ -1.29
MSX1P28360 OR51A3P-201ENST00000413596 924 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 AL590806.1-201ENST00000415818 853 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 AL953862.1-201ENST00000423016 168 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 RPL7P56-201ENST00000429441 717 ntBASIC6.97□□□□□ -1.29
MSX1P28360 DDX11L10-201ENST00000430178 571 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AL138787.1-202ENST00000437804 898 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 AL137074.1-201ENST00000442640 465 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 FTH1P7-201ENST00000450676 552 ntBASIC6.97□□□□□ -1.29
MSX1P28360 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 RNU6-420P-201ENST00000458780 107 ntBASIC6.97□□□□□ -1.29
MSX1P28360 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 RN7SL861P-201ENST00000473793 285 ntBASIC6.97□□□□□ -1.29
MSX1P28360 RPS4XP17-201ENST00000479057 754 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC079080.1-201ENST00000479841 822 ntBASIC6.97□□□□□ -1.29
MSX1P28360 RN7SL332P-201ENST00000482163 254 ntBASIC6.97□□□□□ -1.29
MSX1P28360 CEACAMP3-202ENST00000483806 638 ntBASIC6.97□□□□□ -1.29
MSX1P28360 RPS15AP36-201ENST00000492022 382 ntBASIC6.97□□□□□ -1.29
MSX1P28360 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 AL445187.1-201ENST00000502685 260 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 OR7E99P-201ENST00000505750 922 ntBASIC6.97□□□□□ -1.29
MSX1P28360 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 SCARNA20.1-201ENST00000516009 138 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC6.97□□□□□ -1.29
MSX1P28360 AP003467.2-201ENST00000520175 319 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC008429.4-201ENST00000521201 182 ntBASIC6.97□□□□□ -1.29
MSX1P28360 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 SLC2A13P1-201ENST00000531560 322 ntBASIC6.97□□□□□ -1.29
MSX1P28360 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 EIF4EBP2P2-201ENST00000563883 333 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC018558.5-201ENST00000565840 952 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 AC141257.3-201ENST00000572906 215 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC6.97□□□□□ -1.29
MSX1P28360 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC6.97□□□□□ -1.29
MSX1P28360 AC006006.1-201ENST00000603082 144 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC245014.2-201ENST00000603689 287 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AC246785.4-201ENST00000605374 287 ntBASIC6.97□□□□□ -1.29
MSX1P28360 AL133215.3-201ENST00000609801 448 ntBASIC6.97□□□□□ -1.29
MSX1P28360 5S_rRNA.20-201ENST00000612104 118 ntBASIC6.97□□□□□ -1.29
MSX1P28360 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 SLC37A3-202ENST00000340308 2955 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
MSX1P28360 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
MSX1P28360 CYP4F30P-203ENST00000438109 2250 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 HSP90AB7P-201ENST00000450068 2454 ntBASIC6.96□□□□□ -1.29
MSX1P28360 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 AC106712.1-201ENST00000483840 1888 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 RBFOX2-207ENST00000414461 1706 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
MSX1P28360 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC6.96□□□□□ -1.29
MSX1P28360 SORBS1-208ENST00000371241 2055 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
MSX1P28360 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.96□□□□□ -1.29
MSX1P28360 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.29
MSX1P28360 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
MSX1P28360 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.96□□□□□ -1.3
MSX1P28360 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.96□□□□□ -1.3
MSX1P28360 AC104581.5-201ENST00000624171 7141 ntBASIC6.96□□□□□ -1.3
MSX1P28360 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC6.96□□□□□ -1.3
MSX1P28360 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 Y_RNA.145-201ENST00000363527 102 ntBASIC6.96□□□□□ -1.3
MSX1P28360 RNU6-1322P-201ENST00000364309 107 ntBASIC6.96□□□□□ -1.3
MSX1P28360 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSX1P28360 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 AL139327.1-201ENST00000382988 348 ntBASIC6.96□□□□□ -1.3
MSX1P28360 ISY1-202ENST00000393292 988 ntTSL 5 BASIC6.96□□□□□ -1.3
MSX1P28360 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms