Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 SLC25A24-204ENST00000569674 2357 ntBASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 AL121603.2-201ENST00000557373 2117 ntBASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 KRT18P48-201ENST00000434763 852 ntBASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.84■□□□□ 0.61
PCDHGA1Q9Y5H4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDHGA1Q9Y5H4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PCDHGA1Q9Y5H4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PCDHGA1Q9Y5H4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDHGA1Q9Y5H4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 PCED1CP-201ENST00000419887 785 ntBASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 AL023803.3-201ENST00000615559 522 ntBASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 AC005229.4-201ENST00000610085 2198 ntBASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHGA1Q9Y5H4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 FAM86EP-206ENST00000510506 987 ntBASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 AC011558.1-201ENST00000623459 338 ntBASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 DPP3P2-201ENST00000416030 1696 ntBASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 PHGDH-210ENST00000641115 1638 ntBASIC18.82■□□□□ 0.6
PCDHGA1Q9Y5H4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms