Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 AP006587.1-201ENST00000534129 1502 ntBASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 YBX1P10-201ENST00000444752 975 ntBASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 AC008687.6-201ENST00000596318 630 ntBASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS9D1Q9Y2B5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS9D1Q9Y2B5 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 AC124283.5-201ENST00000624661 1809 ntBASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 UNC93B4-201ENST00000505679 747 ntBASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 AC012183.1-201ENST00000625197 499 ntBASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS9D1Q9Y2B5 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 NIFKP4-201ENST00000567275 1192 ntBASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms