Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 AC018445.3-201ENST00000624177 1945 ntBASIC17.47■□□□□ 0.39
VSX1Q9NZR4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.47■□□□□ 0.39
VSX1Q9NZR4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MIR4758-201ENST00000577688 71 ntBASIC17.46■□□□□ 0.39
VSX1Q9NZR4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MYC-209ENST00000641252 345 ntBASIC17.46■□□□□ 0.39
VSX1Q9NZR4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VSX1Q9NZR4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.46■□□□□ 0.38
VSX1Q9NZR4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.45■□□□□ 0.38
VSX1Q9NZR4 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.45■□□□□ 0.38
VSX1Q9NZR4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.44■□□□□ 0.38
VSX1Q9NZR4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms