Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC32.65■■■□□ 2.82
IFT140Q96RY7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC32.65■■■□□ 2.82
IFT140Q96RY7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC32.65■■■□□ 2.82
IFT140Q96RY7 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC32.65■■■□□ 2.82
IFT140Q96RY7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC32.65■■■□□ 2.82
IFT140Q96RY7 KRT8P8-201ENST00000434750 1448 ntBASIC32.65■■■□□ 2.82
IFT140Q96RY7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
IFT140Q96RY7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
IFT140Q96RY7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC32.64■■■□□ 2.82
IFT140Q96RY7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC32.64■■■□□ 2.82
IFT140Q96RY7 AC079781.3-201ENST00000449110 356 ntBASIC32.64■■■□□ 2.82
IFT140Q96RY7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC32.64■■■□□ 2.82
IFT140Q96RY7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
IFT140Q96RY7 AC016734.2-201ENST00000624325 1377 ntBASIC32.64■■■□□ 2.82
IFT140Q96RY7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
IFT140Q96RY7 AC121338.2-201ENST00000622535 1744 ntBASIC32.64■■■□□ 2.81
IFT140Q96RY7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC32.63■■■□□ 2.81
IFT140Q96RY7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
IFT140Q96RY7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
IFT140Q96RY7 NUS1P1-201ENST00000446295 882 ntBASIC32.63■■■□□ 2.81
IFT140Q96RY7 EMBP1-201ENST00000458200 901 ntBASIC32.63■■■□□ 2.81
IFT140Q96RY7 AL160286.2-201ENST00000567150 934 ntBASIC32.63■■■□□ 2.81
IFT140Q96RY7 SLC25A6P4-201ENST00000586535 553 ntBASIC32.63■■■□□ 2.81
IFT140Q96RY7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
IFT140Q96RY7 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
IFT140Q96RY7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC32.62■■■□□ 2.81
IFT140Q96RY7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC32.62■■■□□ 2.81
IFT140Q96RY7 KRT8P41-201ENST00000533985 1514 ntBASIC32.62■■■□□ 2.81
IFT140Q96RY7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 AL121672.3-201ENST00000608644 468 ntBASIC32.62■■■□□ 2.81
IFT140Q96RY7 GXYLT1P4-201ENST00000613576 1192 ntBASIC32.62■■■□□ 2.81
IFT140Q96RY7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC32.62■■■□□ 2.81
IFT140Q96RY7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
IFT140Q96RY7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
IFT140Q96RY7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
IFT140Q96RY7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
IFT140Q96RY7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
IFT140Q96RY7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
IFT140Q96RY7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
IFT140Q96RY7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 AL160237.2-201ENST00000556165 472 ntBASIC32.61■■■□□ 2.81
IFT140Q96RY7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC32.61■■■□□ 2.81
IFT140Q96RY7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC32.6■■■□□ 2.81
IFT140Q96RY7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC32.6■■■□□ 2.81
IFT140Q96RY7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC32.6■■■□□ 2.81
IFT140Q96RY7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
IFT140Q96RY7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC32.6■■■□□ 2.81
IFT140Q96RY7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC32.6■■■□□ 2.81
IFT140Q96RY7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
IFT140Q96RY7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC32.6■■■□□ 2.81
IFT140Q96RY7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC32.6■■■□□ 2.81
IFT140Q96RY7 AL732292.2-201ENST00000609649 430 ntBASIC32.6■■■□□ 2.81
IFT140Q96RY7 DPP3P2-201ENST00000416030 1696 ntBASIC32.6■■■□□ 2.81
IFT140Q96RY7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC32.6■■■□□ 2.81
IFT140Q96RY7 BX119927.1-201ENST00000636596 1552 ntBASIC32.59■■■□□ 2.81
IFT140Q96RY7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC32.59■■■□□ 2.81
IFT140Q96RY7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
IFT140Q96RY7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
IFT140Q96RY7 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
IFT140Q96RY7 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
IFT140Q96RY7 TSPY19P-201ENST00000418461 509 ntBASIC32.59■■■□□ 2.81
IFT140Q96RY7 TSPY18P-201ENST00000441642 509 ntBASIC32.59■■■□□ 2.81
IFT140Q96RY7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC32.59■■■□□ 2.81
IFT140Q96RY7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC32.59■■■□□ 2.81
IFT140Q96RY7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC32.59■■■□□ 2.81
IFT140Q96RY7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
IFT140Q96RY7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC32.59■■■□□ 2.81
IFT140Q96RY7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC32.58■■■□□ 2.81
IFT140Q96RY7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
IFT140Q96RY7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC32.58■■■□□ 2.81
IFT140Q96RY7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
IFT140Q96RY7 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC32.58■■■□□ 2.81
IFT140Q96RY7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC32.58■■■□□ 2.81
IFT140Q96RY7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC32.58■■■□□ 2.81
IFT140Q96RY7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC32.57■■■□□ 2.8
IFT140Q96RY7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC32.57■■■□□ 2.8
IFT140Q96RY7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC32.57■■■□□ 2.8
IFT140Q96RY7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
IFT140Q96RY7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
IFT140Q96RY7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC32.56■■■□□ 2.8
IFT140Q96RY7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms