Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 AL032819.2-201ENST00000624543 2162 ntBASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 CROCCP5-201ENST00000436658 830 ntBASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLHC1Q8NHS4 AC018553.1-201ENST00000616682 1458 ntBASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 RAP2CP1-201ENST00000605103 478 ntBASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 AC004408.2-201ENST00000623613 2777 ntBASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLHC1Q8NHS4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CLHC1Q8NHS4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CLHC1Q8NHS4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
CLHC1Q8NHS4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 BX323043.1-201ENST00000641006 1765 ntBASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLHC1Q8NHS4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms