Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC89Q8N998 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 LSM12P1-201ENST00000411836 588 ntBASIC20.3■□□□□ 0.84
CCDC89Q8N998 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC89Q8N998 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCDC89Q8N998 AC022517.1-201ENST00000592429 346 ntBASIC20.3■□□□□ 0.84
CCDC89Q8N998 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC89Q8N998 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC89Q8N998 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC89Q8N998 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC89Q8N998 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC89Q8N998 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC89Q8N998 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 AC004911.1-201ENST00000416316 871 ntBASIC20.28■□□□□ 0.84
CCDC89Q8N998 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC89Q8N998 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
CCDC89Q8N998 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
CCDC89Q8N998 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC89Q8N998 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC89Q8N998 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC89Q8N998 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC89Q8N998 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.27■□□□□ 0.83
CCDC89Q8N998 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC89Q8N998 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC89Q8N998 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC89Q8N998 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC89Q8N998 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC89Q8N998 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC89Q8N998 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC89Q8N998 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC89Q8N998 LINC01465-201ENST00000408887 1940 ntBASIC20.26■□□□□ 0.83
CCDC89Q8N998 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms