Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 AC098590.1-201ENST00000468126 897 ntBASIC19.17■□□□□ 0.66
VRK3Q8IV63 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VRK3Q8IV63 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VRK3Q8IV63 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 KRT18P16-201ENST00000510337 1294 ntBASIC19.16■□□□□ 0.66
VRK3Q8IV63 RPPH1-201ENST00000516869 333 ntBASIC19.16■□□□□ 0.66
VRK3Q8IV63 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VRK3Q8IV63 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VRK3Q8IV63 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VRK3Q8IV63 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VRK3Q8IV63 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VRK3Q8IV63 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VRK3Q8IV63 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 AC133681.1-201ENST00000465482 601 ntBASIC19.14■□□□□ 0.65
VRK3Q8IV63 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 AL359736.2-201ENST00000621992 437 ntBASIC19.14■□□□□ 0.65
VRK3Q8IV63 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VRK3Q8IV63 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VRK3Q8IV63 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms