Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC26.7■■□□□ 1.86
NPHP3Q7Z494 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
NPHP3Q7Z494 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
NPHP3Q7Z494 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 STARP1-201ENST00000397973 869 ntBASIC26.69■■□□□ 1.86
NPHP3Q7Z494 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 TSPY21P-201ENST00000433481 731 ntBASIC26.69■■□□□ 1.86
NPHP3Q7Z494 TSPY23P-201ENST00000440136 739 ntBASIC26.69■■□□□ 1.86
NPHP3Q7Z494 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
NPHP3Q7Z494 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 BCL10-202ENST00000620248 774 ntTSL 5 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
NPHP3Q7Z494 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 Telomerase-vert.1-201ENST00000363312 438 ntBASIC26.67■■□□□ 1.86
NPHP3Q7Z494 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 NPAP1P7-201ENST00000613027 823 ntBASIC26.67■■□□□ 1.86
NPHP3Q7Z494 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 KRT8P8-201ENST00000434750 1448 ntBASIC26.67■■□□□ 1.86
NPHP3Q7Z494 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NPHP3Q7Z494 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 CKBP1-201ENST00000565489 1086 ntBASIC26.66■■□□□ 1.86
NPHP3Q7Z494 AL160286.2-201ENST00000567150 934 ntBASIC26.66■■□□□ 1.86
NPHP3Q7Z494 NEK4P2-201ENST00000580004 1012 ntBASIC26.66■■□□□ 1.86
NPHP3Q7Z494 PLK5-205ENST00000642079 1969 ntBASIC26.66■■□□□ 1.86
NPHP3Q7Z494 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NPHP3Q7Z494 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 PHB2-202ENST00000440277 996 ntTSL 5 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 CNP-204ENST00000472031 1019 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 LINC01311-201ENST00000565162 1445 ntBASIC26.65■■□□□ 1.86
NPHP3Q7Z494 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 NT5C-210ENST00000582160 860 ntTSL 2 BASIC26.65■■□□□ 1.86
NPHP3Q7Z494 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC26.64■■□□□ 1.86
NPHP3Q7Z494 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC26.64■■□□□ 1.86
NPHP3Q7Z494 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
NPHP3Q7Z494 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
NPHP3Q7Z494 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC26.64■■□□□ 1.85
NPHP3Q7Z494 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
NPHP3Q7Z494 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC26.64■■□□□ 1.85
NPHP3Q7Z494 FDX1P1-201ENST00000449115 551 ntBASIC26.64■■□□□ 1.85
NPHP3Q7Z494 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC26.64■■□□□ 1.85
NPHP3Q7Z494 KLK8-205ENST00000593490 267 ntTSL 3 BASIC26.64■■□□□ 1.85
NPHP3Q7Z494 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
NPHP3Q7Z494 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP3Q7Z494 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP3Q7Z494 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP3Q7Z494 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC26.63■■□□□ 1.85
NPHP3Q7Z494 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP3Q7Z494 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NPHP3Q7Z494 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms