Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM3Q53GG5 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 AC091799.1-201ENST00000422823 811 ntBASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 AC026366.1-201ENST00000488803 879 ntBASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM3Q53GG5 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 BX119927.1-201ENST00000636596 1552 ntBASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 AL359736.2-201ENST00000621992 437 ntBASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PDLIM3Q53GG5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 AC007322.3-201ENST00000426526 701 ntBASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 SNORA78-201ENST00000459373 127 ntBASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 AP001160.3-201ENST00000601484 763 ntBASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 FAM21FP-204ENST00000608637 956 ntBASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms