Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 NCF1B-203ENST00000435988 1254 ntBASIC22.57■■□□□ 1.2
SF3A1Q15459 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.57■■□□□ 1.2
SF3A1Q15459 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC22.57■■□□□ 1.2
SF3A1Q15459 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
SF3A1Q15459 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.57■■□□□ 1.2
SF3A1Q15459 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.57■■□□□ 1.2
SF3A1Q15459 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
SF3A1Q15459 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC22.57■■□□□ 1.2
SF3A1Q15459 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
SF3A1Q15459 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
SF3A1Q15459 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SF3A1Q15459 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SF3A1Q15459 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
SF3A1Q15459 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.57■■□□□ 1.2
SF3A1Q15459 AC018445.3-201ENST00000624177 1945 ntBASIC22.57■■□□□ 1.2
SF3A1Q15459 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
SF3A1Q15459 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC22.56■■□□□ 1.2
SF3A1Q15459 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SF3A1Q15459 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.56■■□□□ 1.2
SF3A1Q15459 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.56■■□□□ 1.2
SF3A1Q15459 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.56■■□□□ 1.2
SF3A1Q15459 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.56■■□□□ 1.2
SF3A1Q15459 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.56■■□□□ 1.2
SF3A1Q15459 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SF3A1Q15459 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
SF3A1Q15459 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
SF3A1Q15459 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SF3A1Q15459 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SF3A1Q15459 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SF3A1Q15459 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
SF3A1Q15459 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC22.55■■□□□ 1.2
SF3A1Q15459 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SF3A1Q15459 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 TSPY6P-201ENST00000448518 926 ntBASIC22.55■■□□□ 1.2
SF3A1Q15459 AC092118.2-201ENST00000613495 667 ntBASIC22.55■■□□□ 1.2
SF3A1Q15459 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SF3A1Q15459 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SF3A1Q15459 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC22.55■■□□□ 1.2
SF3A1Q15459 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
SF3A1Q15459 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC22.54■■□□□ 1.2
SF3A1Q15459 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC22.54■■□□□ 1.2
SF3A1Q15459 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.54■■□□□ 1.2
SF3A1Q15459 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC22.54■■□□□ 1.2
SF3A1Q15459 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.54■■□□□ 1.2
SF3A1Q15459 AC091874.3-201ENST00000512672 1195 ntBASIC22.54■■□□□ 1.2
SF3A1Q15459 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.54■■□□□ 1.2
SF3A1Q15459 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.54■■□□□ 1.2
SF3A1Q15459 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SF3A1Q15459 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SF3A1Q15459 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.53■■□□□ 1.2
SF3A1Q15459 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SF3A1Q15459 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
SF3A1Q15459 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.53■■□□□ 1.2
SF3A1Q15459 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SF3A1Q15459 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SF3A1Q15459 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
SF3A1Q15459 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
SF3A1Q15459 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SF3A1Q15459 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SF3A1Q15459 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.53■■□□□ 1.2
SF3A1Q15459 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SF3A1Q15459 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC22.53■■□□□ 1.2
SF3A1Q15459 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms