Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIM2P55344 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.6■□□□□ 0.57
LIM2P55344 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LIM2P55344 AP006587.1-201ENST00000534129 1502 ntBASIC18.59■□□□□ 0.57
LIM2P55344 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIM2P55344 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
LIM2P55344 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LIM2P55344 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 KRT18P29-201ENST00000397031 1267 ntBASIC18.59■□□□□ 0.57
LIM2P55344 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.59■□□□□ 0.57
LIM2P55344 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.59■□□□□ 0.57
LIM2P55344 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.59■□□□□ 0.57
LIM2P55344 RN7SL471P-201ENST00000580476 299 ntBASIC18.59■□□□□ 0.57
LIM2P55344 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.59■□□□□ 0.57
LIM2P55344 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
LIM2P55344 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
LIM2P55344 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIM2P55344 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.58■□□□□ 0.57
LIM2P55344 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.58■□□□□ 0.57
LIM2P55344 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIM2P55344 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIM2P55344 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIM2P55344 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIM2P55344 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.58■□□□□ 0.57
LIM2P55344 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
LIM2P55344 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.58■□□□□ 0.57
LIM2P55344 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIM2P55344 AC087289.5-201ENST00000586076 3175 ntBASIC18.58■□□□□ 0.57
LIM2P55344 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIM2P55344 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.58■□□□□ 0.56
LIM2P55344 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.58■□□□□ 0.56
LIM2P55344 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.58■□□□□ 0.56
LIM2P55344 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LIM2P55344 AL023875.1-201ENST00000640777 796 ntBASIC18.58■□□□□ 0.56
LIM2P55344 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIM2P55344 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIM2P55344 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
LIM2P55344 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
LIM2P55344 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIM2P55344 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LIM2P55344 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LIM2P55344 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
LIM2P55344 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIM2P55344 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.57■□□□□ 0.56
LIM2P55344 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.57■□□□□ 0.56
LIM2P55344 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.57■□□□□ 0.56
LIM2P55344 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LIM2P55344 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIM2P55344 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIM2P55344 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.57■□□□□ 0.56
LIM2P55344 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.56■□□□□ 0.56
LIM2P55344 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.56■□□□□ 0.56
LIM2P55344 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.56■□□□□ 0.56
LIM2P55344 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms