Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.38■□□□□ 0.85
CDH6P55285 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.38■□□□□ 0.85
CDH6P55285 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH6P55285 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDH6P55285 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH6P55285 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDH6P55285 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
CDH6P55285 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CDH6P55285 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH6P55285 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CDH6P55285 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
CDH6P55285 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH6P55285 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.37■□□□□ 0.85
CDH6P55285 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH6P55285 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH6P55285 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.37■□□□□ 0.85
CDH6P55285 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CDH6P55285 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.37■□□□□ 0.85
CDH6P55285 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CDH6P55285 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.37■□□□□ 0.85
CDH6P55285 AC120498.8-201ENST00000614275 531 ntBASIC20.37■□□□□ 0.85
CDH6P55285 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH6P55285 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH6P55285 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH6P55285 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.37■□□□□ 0.85
CDH6P55285 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.36■□□□□ 0.85
CDH6P55285 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.36■□□□□ 0.85
CDH6P55285 AL121906.2-201ENST00000621597 723 ntBASIC20.36■□□□□ 0.85
CDH6P55285 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.36■□□□□ 0.85
CDH6P55285 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDH6P55285 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
CDH6P55285 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.35■□□□□ 0.85
CDH6P55285 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.35■□□□□ 0.85
CDH6P55285 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.35■□□□□ 0.85
CDH6P55285 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CDH6P55285 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CDH6P55285 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.35■□□□□ 0.85
CDH6P55285 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CDH6P55285 AC008687.6-201ENST00000596318 630 ntBASIC20.35■□□□□ 0.85
CDH6P55285 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CDH6P55285 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.35■□□□□ 0.85
CDH6P55285 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH6P55285 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 AC005332.7-201ENST00000614046 2005 ntBASIC20.34■□□□□ 0.85
CDH6P55285 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDH6P55285 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.34■□□□□ 0.85
CDH6P55285 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.34■□□□□ 0.85
CDH6P55285 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.34■□□□□ 0.85
CDH6P55285 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.34■□□□□ 0.85
CDH6P55285 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
CDH6P55285 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDH6P55285 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.34■□□□□ 0.85
CDH6P55285 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDH6P55285 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CDH6P55285 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CDH6P55285 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
CDH6P55285 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.33■□□□□ 0.85
CDH6P55285 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.33■□□□□ 0.85
CDH6P55285 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.33■□□□□ 0.85
CDH6P55285 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH6P55285 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.33■□□□□ 0.84
CDH6P55285 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms