Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
COL4A4P53420 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A4P53420 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A4P53420 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
COL4A4P53420 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A4P53420 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL4A4P53420 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
COL4A4P53420 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.04■□□□□ 0.96
COL4A4P53420 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COL4A4P53420 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A4P53420 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COL4A4P53420 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.03■□□□□ 0.96
COL4A4P53420 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A4P53420 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.03■□□□□ 0.96
COL4A4P53420 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.03■□□□□ 0.96
COL4A4P53420 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
COL4A4P53420 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL4A4P53420 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A4P53420 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A4P53420 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL4A4P53420 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.03■□□□□ 0.96
COL4A4P53420 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A4P53420 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A4P53420 AC007663.1-201ENST00000438948 1240 ntBASIC21.02■□□□□ 0.96
COL4A4P53420 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.02■□□□□ 0.96
COL4A4P53420 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A4P53420 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A4P53420 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A4P53420 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A4P53420 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.02■□□□□ 0.96
COL4A4P53420 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.02■□□□□ 0.96
COL4A4P53420 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.02■□□□□ 0.96
COL4A4P53420 AC008622.2-201ENST00000617006 1229 ntBASIC21.02■□□□□ 0.96
COL4A4P53420 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 AC092720.2-201ENST00000602388 1665 ntBASIC21.02■□□□□ 0.96
COL4A4P53420 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A4P53420 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.02■□□□□ 0.96
COL4A4P53420 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL4A4P53420 AC020907.5-201ENST00000624372 1936 ntBASIC21.02■□□□□ 0.96
COL4A4P53420 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A4P53420 AL162377.1-201ENST00000618844 1793 ntBASIC21.02■□□□□ 0.96
COL4A4P53420 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A4P53420 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A4P53420 AC026396.1-201ENST00000419388 421 ntBASIC21.02■□□□□ 0.95
COL4A4P53420 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
COL4A4P53420 AL671277.2-201ENST00000458060 996 ntBASIC21.02■□□□□ 0.95
COL4A4P53420 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.02■□□□□ 0.95
COL4A4P53420 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.02■□□□□ 0.95
COL4A4P53420 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A4P53420 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL4A4P53420 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL4A4P53420 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A4P53420 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A4P53420 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A4P53420 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A4P53420 BX664615.1-201ENST00000443558 458 ntBASIC21.01■□□□□ 0.95
COL4A4P53420 COX11P1-201ENST00000489116 835 ntBASIC21.01■□□□□ 0.95
COL4A4P53420 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A4P53420 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.01■□□□□ 0.95
COL4A4P53420 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A4P53420 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A4P53420 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A4P53420 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A4P53420 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.01■□□□□ 0.95
COL4A4P53420 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 AP006587.1-201ENST00000534129 1502 ntBASIC21■□□□□ 0.95
COL4A4P53420 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21■□□□□ 0.95
COL4A4P53420 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21■□□□□ 0.95
COL4A4P53420 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21■□□□□ 0.95
COL4A4P53420 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 AC141257.4-201ENST00000634557 245 ntBASIC21■□□□□ 0.95
COL4A4P53420 AC136944.6-201ENST00000634818 245 ntBASIC21■□□□□ 0.95
COL4A4P53420 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL4A4P53420 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A4P53420 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A4P53420 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A4P53420 HLA-G-202ENST00000376815 851 ntBASIC20.99■□□□□ 0.95
COL4A4P53420 HLA-G-203ENST00000376818 1127 ntBASIC20.99■□□□□ 0.95
COL4A4P53420 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A4P53420 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A4P53420 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A4P53420 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A4P53420 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms