Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC26.02■■□□□ 1.76
COL18A1P39060 AL160286.2-201ENST00000567150 934 ntBASIC26.02■■□□□ 1.76
COL18A1P39060 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC26.02■■□□□ 1.76
COL18A1P39060 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC26.02■■□□□ 1.76
COL18A1P39060 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
COL18A1P39060 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.01■■□□□ 1.76
COL18A1P39060 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL18A1P39060 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL18A1P39060 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC26.01■■□□□ 1.75
COL18A1P39060 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
COL18A1P39060 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC26.01■■□□□ 1.75
COL18A1P39060 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL18A1P39060 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL18A1P39060 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC26■■□□□ 1.75
COL18A1P39060 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC26■■□□□ 1.75
COL18A1P39060 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC26■■□□□ 1.75
COL18A1P39060 HCG4P8-203ENST00000443049 980 ntBASIC26■■□□□ 1.75
COL18A1P39060 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC26■■□□□ 1.75
COL18A1P39060 CKBP1-201ENST00000565489 1086 ntBASIC26■■□□□ 1.75
COL18A1P39060 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC26■■□□□ 1.75
COL18A1P39060 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
COL18A1P39060 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC26■■□□□ 1.75
COL18A1P39060 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
COL18A1P39060 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC26■■□□□ 1.75
COL18A1P39060 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
COL18A1P39060 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC26■■□□□ 1.75
COL18A1P39060 AC112907.2-201ENST00000448639 330 ntBASIC26■■□□□ 1.75
COL18A1P39060 HOMER2P1-201ENST00000455653 964 ntBASIC26■■□□□ 1.75
COL18A1P39060 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC26■■□□□ 1.75
COL18A1P39060 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
COL18A1P39060 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC25.99■■□□□ 1.75
COL18A1P39060 FEM1AP1-201ENST00000431297 1995 ntBASIC25.99■■□□□ 1.75
COL18A1P39060 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
COL18A1P39060 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 AP001271.2-201ENST00000624018 1556 ntBASIC25.99■■□□□ 1.75
COL18A1P39060 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
COL18A1P39060 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC25.98■■□□□ 1.75
COL18A1P39060 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 DAP-202ENST00000432074 1048 ntTSL 2 BASIC25.98■■□□□ 1.75
COL18A1P39060 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC25.98■■□□□ 1.75
COL18A1P39060 SPDYE13P-201ENST00000445314 798 ntBASIC25.98■■□□□ 1.75
COL18A1P39060 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC25.98■■□□□ 1.75
COL18A1P39060 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC25.98■■□□□ 1.75
COL18A1P39060 NT5C-210ENST00000582160 860 ntTSL 2 BASIC25.98■■□□□ 1.75
COL18A1P39060 MOK-225ENST00000522867 1883 ntTSL 5 BASIC25.98■■□□□ 1.75
COL18A1P39060 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC25.98■■□□□ 1.75
COL18A1P39060 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
COL18A1P39060 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL18A1P39060 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC25.97■■□□□ 1.75
COL18A1P39060 HYMAI.1-201ENST00000620949 238 ntBASIC25.97■■□□□ 1.75
COL18A1P39060 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC25.97■■□□□ 1.75
COL18A1P39060 SMG8-203ENST00000578922 2178 ntBASIC25.97■■□□□ 1.75
COL18A1P39060 LINC01465-201ENST00000408887 1940 ntBASIC25.97■■□□□ 1.75
COL18A1P39060 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
COL18A1P39060 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC25.97■■□□□ 1.75
COL18A1P39060 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
COL18A1P39060 NME1-207ENST00000480143 964 ntTSL 2 BASIC25.97■■□□□ 1.75
COL18A1P39060 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC25.97■■□□□ 1.75
COL18A1P39060 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC25.97■■□□□ 1.75
COL18A1P39060 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC25.97■■□□□ 1.75
COL18A1P39060 DFFB-212ENST00000625756 649 ntTSL 5 BASIC25.97■■□□□ 1.75
COL18A1P39060 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC25.97■■□□□ 1.75
COL18A1P39060 KRT8P45-201ENST00000414328 1447 ntBASIC25.97■■□□□ 1.75
COL18A1P39060 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC25.96■■□□□ 1.75
COL18A1P39060 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC25.96■■□□□ 1.75
COL18A1P39060 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 AL450487.1-201ENST00000426799 995 ntBASIC25.96■■□□□ 1.75
COL18A1P39060 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
COL18A1P39060 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC25.96■■□□□ 1.75
COL18A1P39060 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC25.96■■□□□ 1.75
COL18A1P39060 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL18A1P39060 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
COL18A1P39060 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC25.95■■□□□ 1.75
COL18A1P39060 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
COL18A1P39060 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.75
COL18A1P39060 PTK2-216ENST00000519881 863 ntTSL 3 BASIC25.95■■□□□ 1.75
COL18A1P39060 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC25.95■■□□□ 1.75
COL18A1P39060 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
COL18A1P39060 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms