Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
PTPN4P29074 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.61■□□□□ 0.73
PTPN4P29074 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.61■□□□□ 0.73
PTPN4P29074 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
PTPN4P29074 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.61■□□□□ 0.73
PTPN4P29074 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.61■□□□□ 0.73
PTPN4P29074 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
PTPN4P29074 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN4P29074 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
PTPN4P29074 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
PTPN4P29074 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
PTPN4P29074 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.6■□□□□ 0.73
PTPN4P29074 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.6■□□□□ 0.73
PTPN4P29074 DUSP5P2-201ENST00000426873 1033 ntBASIC19.6■□□□□ 0.73
PTPN4P29074 AC245052.3-201ENST00000450182 901 ntBASIC19.6■□□□□ 0.73
PTPN4P29074 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.6■□□□□ 0.73
PTPN4P29074 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.6■□□□□ 0.73
PTPN4P29074 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTPN4P29074 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
PTPN4P29074 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.6■□□□□ 0.73
PTPN4P29074 AL138781.2-201ENST00000617896 1843 ntBASIC19.6■□□□□ 0.73
PTPN4P29074 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN4P29074 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
PTPN4P29074 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.59■□□□□ 0.73
PTPN4P29074 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.59■□□□□ 0.73
PTPN4P29074 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
PTPN4P29074 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PTPN4P29074 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.59■□□□□ 0.73
PTPN4P29074 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
PTPN4P29074 AC008687.6-201ENST00000596318 630 ntBASIC19.59■□□□□ 0.73
PTPN4P29074 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
PTPN4P29074 AC007613.1-201ENST00000572811 2597 ntBASIC19.59■□□□□ 0.73
PTPN4P29074 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.59■□□□□ 0.73
PTPN4P29074 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.59■□□□□ 0.73
PTPN4P29074 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTPN4P29074 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTPN4P29074 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTPN4P29074 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
PTPN4P29074 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.58■□□□□ 0.73
PTPN4P29074 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
PTPN4P29074 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
PTPN4P29074 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.58■□□□□ 0.72
PTPN4P29074 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
PTPN4P29074 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.58■□□□□ 0.72
PTPN4P29074 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.58■□□□□ 0.72
PTPN4P29074 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.58■□□□□ 0.72
PTPN4P29074 FAM21FP-204ENST00000608637 956 ntBASIC19.58■□□□□ 0.72
PTPN4P29074 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.58■□□□□ 0.72
PTPN4P29074 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PTPN4P29074 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
PTPN4P29074 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
PTPN4P29074 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.58■□□□□ 0.72
PTPN4P29074 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTPN4P29074 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PTPN4P29074 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.57■□□□□ 0.72
PTPN4P29074 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
PTPN4P29074 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 LSM12P1-201ENST00000411836 588 ntBASIC19.57■□□□□ 0.72
PTPN4P29074 AC091799.1-201ENST00000422823 811 ntBASIC19.57■□□□□ 0.72
PTPN4P29074 CDV3P1-201ENST00000471403 739 ntBASIC19.57■□□□□ 0.72
PTPN4P29074 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
PTPN4P29074 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms