Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 ETFA-216ENST00000560726 942 ntTSL 3 BASIC24.84■■□□□ 1.57
COL5A3P25940 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC24.84■■□□□ 1.57
COL5A3P25940 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.84■■□□□ 1.57
COL5A3P25940 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
COL5A3P25940 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 FEM1AP1-201ENST00000431297 1995 ntBASIC24.84■■□□□ 1.57
COL5A3P25940 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 DAP-202ENST00000432074 1048 ntTSL 2 BASIC24.83■■□□□ 1.57
COL5A3P25940 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.83■■□□□ 1.57
COL5A3P25940 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
COL5A3P25940 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
COL5A3P25940 HOMER2P1-201ENST00000455653 964 ntBASIC24.83■■□□□ 1.57
COL5A3P25940 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC24.83■■□□□ 1.57
COL5A3P25940 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL5A3P25940 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.83■■□□□ 1.57
COL5A3P25940 CKBP1-201ENST00000565489 1086 ntBASIC24.83■■□□□ 1.57
COL5A3P25940 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.83■■□□□ 1.57
COL5A3P25940 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC24.83■■□□□ 1.57
COL5A3P25940 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
COL5A3P25940 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
COL5A3P25940 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
COL5A3P25940 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
COL5A3P25940 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
COL5A3P25940 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC24.82■■□□□ 1.56
COL5A3P25940 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.82■■□□□ 1.56
COL5A3P25940 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24.82■■□□□ 1.56
COL5A3P25940 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
COL5A3P25940 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
COL5A3P25940 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
COL5A3P25940 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
COL5A3P25940 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
COL5A3P25940 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC24.81■■□□□ 1.56
COL5A3P25940 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
COL5A3P25940 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.81■■□□□ 1.56
COL5A3P25940 KRT126P-201ENST00000549467 1181 ntBASIC24.81■■□□□ 1.56
COL5A3P25940 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.81■■□□□ 1.56
COL5A3P25940 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
COL5A3P25940 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC24.81■■□□□ 1.56
COL5A3P25940 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
COL5A3P25940 SMG8-203ENST00000578922 2178 ntBASIC24.81■■□□□ 1.56
COL5A3P25940 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL5A3P25940 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.81■■□□□ 1.56
COL5A3P25940 AL512604.3-201ENST00000569583 964 ntBASIC24.81■■□□□ 1.56
COL5A3P25940 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.81■■□□□ 1.56
COL5A3P25940 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC24.8■■□□□ 1.56
COL5A3P25940 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
COL5A3P25940 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
COL5A3P25940 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL5A3P25940 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC24.8■■□□□ 1.56
COL5A3P25940 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.8■■□□□ 1.56
COL5A3P25940 SPDYE15P-201ENST00000424157 909 ntBASIC24.8■■□□□ 1.56
COL5A3P25940 AL450487.1-201ENST00000426799 995 ntBASIC24.8■■□□□ 1.56
COL5A3P25940 SPDYE13P-201ENST00000445314 798 ntBASIC24.8■■□□□ 1.56
COL5A3P25940 NT5C-210ENST00000582160 860 ntTSL 2 BASIC24.8■■□□□ 1.56
COL5A3P25940 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
COL5A3P25940 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
COL5A3P25940 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL5A3P25940 LINC01465-201ENST00000408887 1940 ntBASIC24.8■■□□□ 1.56
COL5A3P25940 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL5A3P25940 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL5A3P25940 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.79■■□□□ 1.56
COL5A3P25940 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
COL5A3P25940 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.79■■□□□ 1.56
COL5A3P25940 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.79■■□□□ 1.56
COL5A3P25940 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC24.79■■□□□ 1.56
COL5A3P25940 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.79■■□□□ 1.56
COL5A3P25940 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
COL5A3P25940 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.79■■□□□ 1.56
COL5A3P25940 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
COL5A3P25940 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.79■■□□□ 1.56
COL5A3P25940 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
COL5A3P25940 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC24.79■■□□□ 1.56
COL5A3P25940 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL5A3P25940 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms