Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A3P12111 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 LINC00167-201ENST00000530583 1419 ntBASIC20.57■□□□□ 0.88
COL6A3P12111 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A3P12111 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL6A3P12111 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.57■□□□□ 0.88
COL6A3P12111 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
COL6A3P12111 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A3P12111 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.57■□□□□ 0.88
COL6A3P12111 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.57■□□□□ 0.88
COL6A3P12111 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A3P12111 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A3P12111 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 REXO1L6P-202ENST00000619970 1078 ntBASIC20.56■□□□□ 0.88
COL6A3P12111 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL6A3P12111 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 AP001005.1-201ENST00000571755 1248 ntBASIC20.56■□□□□ 0.88
COL6A3P12111 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 AL121772.3-201ENST00000610840 674 ntBASIC20.56■□□□□ 0.88
COL6A3P12111 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.56■□□□□ 0.88
COL6A3P12111 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.56■□□□□ 0.88
COL6A3P12111 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.56■□□□□ 0.88
COL6A3P12111 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A3P12111 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A3P12111 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
COL6A3P12111 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
COL6A3P12111 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL6A3P12111 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
COL6A3P12111 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL6A3P12111 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 AC127496.7-201ENST00000625110 1798 ntBASIC20.55■□□□□ 0.88
COL6A3P12111 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL6A3P12111 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.55■□□□□ 0.88
COL6A3P12111 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.55■□□□□ 0.88
COL6A3P12111 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.55■□□□□ 0.88
COL6A3P12111 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.55■□□□□ 0.88
COL6A3P12111 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A3P12111 RASA4DP-201ENST00000460726 1199 ntBASIC20.54■□□□□ 0.88
COL6A3P12111 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL6A3P12111 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.54■□□□□ 0.88
COL6A3P12111 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A3P12111 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 FAM99A-202ENST00000538190 1989 ntBASIC20.54■□□□□ 0.88
COL6A3P12111 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL6A3P12111 AP006587.1-201ENST00000534129 1502 ntBASIC20.54■□□□□ 0.88
COL6A3P12111 AC073648.2-201ENST00000510116 352 ntBASIC20.54■□□□□ 0.88
COL6A3P12111 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.54■□□□□ 0.88
COL6A3P12111 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
COL6A3P12111 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.54■□□□□ 0.88
COL6A3P12111 AC010327.4-202ENST00000591484 748 ntBASIC20.54■□□□□ 0.88
COL6A3P12111 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A3P12111 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A3P12111 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL6A3P12111 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A3P12111 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 Z85996.1-201ENST00000494644 937 ntBASIC20.53■□□□□ 0.88
COL6A3P12111 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A3P12111 AC131212.4-201ENST00000623606 975 ntBASIC20.53■□□□□ 0.88
COL6A3P12111 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A3P12111 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms