Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.4■□□□□ 0.22
ABCA1O95477 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
ABCA1O95477 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.39■□□□□ 0.21
ABCA1O95477 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.39■□□□□ 0.21
ABCA1O95477 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 MIR2861-201ENST00000636310 90 ntBASIC16.39■□□□□ 0.21
ABCA1O95477 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ABCA1O95477 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
ABCA1O95477 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.39■□□□□ 0.21
ABCA1O95477 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.39■□□□□ 0.21
ABCA1O95477 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 LIN28AP1-201ENST00000429574 405 ntBASIC16.39■□□□□ 0.21
ABCA1O95477 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.39■□□□□ 0.21
ABCA1O95477 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA1O95477 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ABCA1O95477 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
ABCA1O95477 ECEL1P2-202ENST00000465689 757 ntBASIC16.38■□□□□ 0.21
ABCA1O95477 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.38■□□□□ 0.21
ABCA1O95477 AC091076.1-201ENST00000610741 619 ntBASIC16.38■□□□□ 0.21
ABCA1O95477 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
ABCA1O95477 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ABCA1O95477 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.38■□□□□ 0.21
ABCA1O95477 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 HTR7P1-202ENST00000624664 4411 ntBASIC16.38■□□□□ 0.21
ABCA1O95477 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.38■□□□□ 0.21
ABCA1O95477 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.38■□□□□ 0.21
ABCA1O95477 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 AC022616.7-201ENST00000525383 220 ntBASIC16.38■□□□□ 0.21
ABCA1O95477 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA1O95477 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA1O95477 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
ABCA1O95477 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
ABCA1O95477 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.37■□□□□ 0.21
ABCA1O95477 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.37■□□□□ 0.21
ABCA1O95477 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.37■□□□□ 0.21
ABCA1O95477 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
ABCA1O95477 AL358472.4-201ENST00000633140 710 ntBASIC16.37■□□□□ 0.21
ABCA1O95477 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
ABCA1O95477 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.37■□□□□ 0.21
ABCA1O95477 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.37■□□□□ 0.21
ABCA1O95477 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.37■□□□□ 0.21
ABCA1O95477 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
ABCA1O95477 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 AC120498.9-201ENST00000339021 3867 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms