Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM38O00635 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM38O00635 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM38O00635 MIR1224-201ENST00000408193 85 ntBASIC19.7■□□□□ 0.74
TRIM38O00635 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM38O00635 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM38O00635 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM38O00635 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM38O00635 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM38O00635 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM38O00635 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM38O00635 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
TRIM38O00635 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM38O00635 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM38O00635 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM38O00635 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM38O00635 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM38O00635 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM38O00635 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM38O00635 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM38O00635 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM38O00635 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TRIM38O00635 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM38O00635 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TRIM38O00635 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM38O00635 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM38O00635 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM38O00635 KRT18P21-201ENST00000515767 1272 ntBASIC19.68■□□□□ 0.74
TRIM38O00635 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM38O00635 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.68■□□□□ 0.74
TRIM38O00635 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM38O00635 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM38O00635 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TRIM38O00635 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM38O00635 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM38O00635 BX323043.1-201ENST00000641006 1765 ntBASIC19.67■□□□□ 0.74
TRIM38O00635 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TRIM38O00635 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TRIM38O00635 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM38O00635 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM38O00635 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM38O00635 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM38O00635 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM38O00635 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.67■□□□□ 0.74
TRIM38O00635 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TRIM38O00635 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM38O00635 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 AC018445.3-201ENST00000624177 1945 ntBASIC19.66■□□□□ 0.74
TRIM38O00635 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM38O00635 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM38O00635 AC087499.1-201ENST00000418141 1075 ntBASIC19.66■□□□□ 0.74
TRIM38O00635 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM38O00635 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM38O00635 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM38O00635 AL355075.4-201ENST00000554988 638 ntBASIC19.66■□□□□ 0.74
TRIM38O00635 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
TRIM38O00635 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms