Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 AC130360.2-201ENST00000533477 1556 ntBASIC6.14□□□□□ -1.43
TDP1Q9NUW8 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.14□□□□□ -1.43
TDP1Q9NUW8 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC022034.1-201ENST00000512867 2156 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 RNU6-906P-201ENST00000384700 70 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 OR2AT2P-201ENST00000413438 905 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MRPL53P1-201ENST00000414323 319 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MTCO2P21-201ENST00000419780 677 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC007562.1-201ENST00000421819 517 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC127526.2-201ENST00000426436 775 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC002504.1-201ENST00000438281 691 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MTCYBP31-201ENST00000438855 1122 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC023274.2-201ENST00000445264 521 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 SDC4P-201ENST00000453285 601 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 RN7SL177P-201ENST00000476596 299 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC113420.1-201ENST00000507903 571 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC005351.1-201ENST00000511152 786 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 ZNF971P-201ENST00000562068 1249 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC007225.2-201ENST00000562529 256 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AL132657.2-201ENST00000564417 358 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC012254.4-201ENST00000588843 273 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 uc_338.26-201ENST00000612659 160 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 RN7SL544P-201ENST00000617232 284 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 RN7SL763P-201ENST00000620922 284 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC011330.2-201ENST00000621680 635 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC004777.1-201ENST00000624317 287 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 AC079753.1-201ENST00000623243 3868 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 SHQ1P1-201ENST00000437111 1544 ntBASIC6.13□□□□□ -1.43
TDP1Q9NUW8 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.13□□□□□ -1.43
TDP1Q9NUW8 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RNA5SP46-201ENST00000362370 120 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RNU5B-1-201ENST00000363286 116 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RNA5SP394-201ENST00000364216 119 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 HMGB1P20-201ENST00000402555 677 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RN7SKP151-201ENST00000410230 316 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RN7SKP29-201ENST00000410957 272 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MYL6P5-201ENST00000412707 459 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RPA2P2-201ENST00000419698 796 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 EIF4A1P1-201ENST00000420241 934 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms