Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
CCDC140Q96MF4 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL356361.1-201ENST00000400943 1459 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL157713.1-201ENST00000379752 1531 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RNU6-984P-201ENST00000363236 109 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RNU6-777P-201ENST00000364265 104 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 SNORA30B-201ENST00000365319 129 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RPS3AP36-201ENST00000398190 775 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL121878.1-201ENST00000418638 859 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC093107.1-201ENST00000422772 609 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 PPIL1P1-201ENST00000423936 499 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC104698.1-201ENST00000435671 276 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC079781.1-201ENST00000441505 394 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 Z99127.3-201ENST00000448158 395 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL590365.1-201ENST00000450788 243 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC003071.1-201ENST00000451219 789 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 FGF7P6-202ENST00000451282 293 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 HMGN3P1-201ENST00000453847 193 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RPL21P6-201ENST00000479171 504 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RN7SL152P-201ENST00000484176 298 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RN7SL182P-201ENST00000496499 300 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 MYL12BP2-201ENST00000503948 512 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC055733.3-201ENST00000505214 523 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 DUTP7-201ENST00000507982 486 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 POU5F1P7-201ENST00000508759 541 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 KRT19P6-201ENST00000510983 209 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC006499.2-201ENST00000513470 337 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC120036.3-201ENST00000517826 292 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 UBE2CP4-201ENST00000561405 535 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AP005205.1-201ENST00000563503 508 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 DPPA2P4-201ENST00000563717 878 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LINC00556-201ENST00000569603 412 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 MRPS21P9-201ENST00000571150 257 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 MIR5705-201ENST00000579870 89 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 RPS11-203ENST00000596873 583 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LSM1P2-201ENST00000604911 322 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AP000894.4-201ENST00000610185 483 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC087893.2-201ENST00000623272 255 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL132796.3-201ENST00000624703 900 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms