Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC004232.3-201ENST00000622977 525 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 LINC01616-201ENST00000561816 2280 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AC106872.5-201ENST00000508856 1416 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 SGO1P1-201ENST00000603525 1447 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC095050.2-201ENST00000510748 1458 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC024651.2-201ENST00000562480 2098 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USP39Q53GS9 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AF287957.1-201ENST00000607368 1595 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USP39Q53GS9 RNU6-618P-201ENST00000363518 112 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 Y_RNA.201-201ENST00000364052 96 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 RN7SKP97-201ENST00000410966 333 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AL513325.1-201ENST00000417716 1034 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 TIMM9P2-201ENST00000419324 266 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC245884.2-201ENST00000426257 404 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 NDUFS5P5-201ENST00000437256 321 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC064862.4-201ENST00000442180 334 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 FTLP8-201ENST00000446770 267 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 MYO5BP2-201ENST00000449815 1277 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 VN1R38P-201ENST00000450265 887 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC073387.1-201ENST00000453261 709 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 RPS27AP2-201ENST00000457576 465 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 SNX18P26-201ENST00000458433 740 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC026348.1-201ENST00000462549 1053 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC008427.1-201ENST00000503102 655 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 ASNSP4-201ENST00000511103 447 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC103833.1-201ENST00000517442 172 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USP39Q53GS9 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USP39Q53GS9 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 SNORD95-201ENST00000579879 68 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC233702.7-202ENST00000582941 211 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AL008723.3-201ENST00000608926 449 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC024255.1-201ENST00000614376 102 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC007786.3-201ENST00000615154 596 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AL445649.1-201ENST00000615941 691 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AP002782.1-201ENST00000623107 614 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USP39Q53GS9 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USP39Q53GS9 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 AL442128.2-201ENST00000620246 1824 ntBASIC6.2□□□□□ -1.42
USP39Q53GS9 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USP39Q53GS9 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.2□□□□□ -1.42
USP39Q53GS9 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.2□□□□□ -1.42
USP39Q53GS9 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC011369.2-201ENST00000624423 1567 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 U3.25-201ENST00000391209 220 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AP002784.2-201ENST00000397300 549 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 HMGB1P13-201ENST00000406019 642 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AMZ2P2-201ENST00000406819 1057 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 CBX1P3-201ENST00000413296 527 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms