Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 OR7E22P-201ENST00000478335 1035 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 RN7SL809P-201ENST00000482040 297 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.05□□□□□ -1.6
SCN1BQ07699 CR383658.1-201ENST00000514609 734 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 RNA5SP228-201ENST00000516232 133 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 RNU6-347P-201ENST00000516658 105 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 MIR2117-201ENST00000516780 80 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 AC026688.1-201ENST00000520639 1168 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.05□□□□□ -1.6
SCN1BQ07699 AP001000.1-201ENST00000526843 742 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.05□□□□□ -1.6
SCN1BQ07699 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SCN1BQ07699 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.05□□□□□ -1.6
SCN1BQ07699 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.05□□□□□ -1.6
SCN1BQ07699 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 MT1CP-201ENST00000567054 174 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.05□□□□□ -1.6
SCN1BQ07699 MIR744-201ENST00000578242 98 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.05□□□□□ -1.6
SCN1BQ07699 RN7SL230P-201ENST00000580835 303 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.05□□□□□ -1.6
SCN1BQ07699 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.05□□□□□ -1.6
SCN1BQ07699 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.05□□□□□ -1.6
SCN1BQ07699 AL096803.3-201ENST00000609032 532 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.05□□□□□ -1.6
SCN1BQ07699 AC096861.1-201ENST00000616652 240 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 AL512652.1-201ENST00000619006 500 ntBASIC5.05□□□□□ -1.6
SCN1BQ07699 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.05□□□□□ -1.6
SCN1BQ07699 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.05□□□□□ -1.6
SCN1BQ07699 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.05□□□□□ -1.6
SCN1BQ07699 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.05□□□□□ -1.6
SCN1BQ07699 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.05□□□□□ -1.6
SCN1BQ07699 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
SCN1BQ07699 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SCN1BQ07699 PCAT14-202ENST00000627127 3935 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 MFSD8-239ENST00000641590 2479 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.04□□□□□ -1.6
SCN1BQ07699 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SCN1BQ07699 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 FTLP8-201ENST00000446770 267 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 AC112484.3-201ENST00000505910 329 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 RNU6-1004P-201ENST00000516584 111 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 RNA5SP434-201ENST00000516647 121 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC087272.1-201ENST00000523624 533 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 HAUS1P3-201ENST00000523909 662 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC036111.2-201ENST00000533247 901 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 AL049870.4-201ENST00000555741 486 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 AC007346.1-201ENST00000569208 867 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 MIR3936-201ENST00000584304 110 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.04□□□□□ -1.6
SCN1BQ07699 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 AC015819.1-201ENST00000613588 663 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 AC011472.4-201ENST00000615848 491 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 BNIP3P41-202ENST00000616656 861 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 uc_338.9-201ENST00000617424 182 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SCN1BQ07699 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 CCT8P1-201ENST00000413611 1657 ntBASIC5.04□□□□□ -1.6
SCN1BQ07699 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.04□□□□□ -1.6
SCN1BQ07699 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 148.5 ms