Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC092111.2-201ENST00000611627 1414 ntBASIC6.38□□□□□ -1.39
RNF4P78317 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
RNF4P78317 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 AC112255.1-201ENST00000624070 2493 ntBASIC6.37□□□□□ -1.39
RNF4P78317 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 AC095038.1-201ENST00000429248 1591 ntBASIC6.37□□□□□ -1.39
RNF4P78317 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 MTCO1P6-201ENST00000481192 1384 ntBASIC6.37□□□□□ -1.39
RNF4P78317 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
RNF4P78317 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
RNF4P78317 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 IL6-203ENST00000401651 539 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 VN1R12P-201ENST00000403778 876 ntBASIC6.37□□□□□ -1.39
RNF4P78317 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.37□□□□□ -1.39
RNF4P78317 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 MGAT2P2-201ENST00000427194 797 ntBASIC6.37□□□□□ -1.39
RNF4P78317 SEPT7P5-201ENST00000434048 306 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 TMX2P1-201ENST00000436507 708 ntBASIC6.37□□□□□ -1.39
RNF4P78317 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 RPL7P29-201ENST00000437151 728 ntBASIC6.37□□□□□ -1.39
RNF4P78317 RPL5P10-201ENST00000445207 894 ntBASIC6.37□□□□□ -1.39
RNF4P78317 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.37□□□□□ -1.39
RNF4P78317 AL590004.3-202ENST00000445883 451 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 AC093166.3-201ENST00000448785 303 ntBASIC6.37□□□□□ -1.39
RNF4P78317 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AC110749.1-201ENST00000462007 357 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AC083806.1-201ENST00000468934 316 ntBASIC6.37□□□□□ -1.39
RNF4P78317 RN7SL267P-201ENST00000485107 261 ntBASIC6.37□□□□□ -1.39
RNF4P78317 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 AC006499.5-201ENST00000505037 514 ntBASIC6.37□□□□□ -1.39
RNF4P78317 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 MTHFD2P4-201ENST00000515074 1025 ntBASIC6.37□□□□□ -1.39
RNF4P78317 RNA5SP318-201ENST00000516352 92 ntBASIC6.37□□□□□ -1.39
RNF4P78317 RN7SKP98-201ENST00000517070 156 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC6.37□□□□□ -1.39
RNF4P78317 OR4G1P-201ENST00000588632 938 ntBASIC6.37□□□□□ -1.39
RNF4P78317 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 LARP7P1-201ENST00000605576 316 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AC004908.1-201ENST00000606572 541 ntBASIC6.37□□□□□ -1.39
RNF4P78317 AC106028.5-201ENST00000610332 395 ntBASIC6.37□□□□□ -1.39
RNF4P78317 MIR7844-201ENST00000616161 122 ntBASIC6.37□□□□□ -1.39
RNF4P78317 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 AC022140.2-201ENST00000623500 188 ntBASIC6.37□□□□□ -1.39
RNF4P78317 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC6.37□□□□□ -1.39
RNF4P78317 AC025048.6-202ENST00000627667 438 ntBASIC6.37□□□□□ -1.39
RNF4P78317 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 AC092821.3-202ENST00000641304 2767 ntBASIC6.37□□□□□ -1.39
RNF4P78317 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
RNF4P78317 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
RNF4P78317 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
RNF4P78317 MFSD8-217ENST00000641178 4374 ntBASIC6.36□□□□□ -1.39
RNF4P78317 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC6.36□□□□□ -1.39
RNF4P78317 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
RNF4P78317 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 155.4 ms