Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
COL4A4P53420 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL4A4P53420 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 OR9G4-201ENST00000302957 984 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC092570.3-201ENST00000420113 693 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC068287.1-201ENST00000430283 295 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AL354714.3-201ENST00000447284 493 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 REG1CP-206ENST00000447469 496 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.53□□□□□ -1.52
COL4A4P53420 GAPDHP56-201ENST00000506031 988 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 AC040958.1-201ENST00000561102 201 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 OR52H1-202ENST00000641796 1061 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 NACA-203ENST00000454682 6629 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL4A4P53420 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 AC015799.1-201ENST00000622996 3122 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.53□□□□□ -1.52
COL4A4P53420 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 RNU1-74P-201ENST00000384108 171 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 RPL7AP49-201ENST00000429522 581 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AL591438.1-201ENST00000433508 581 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL4A4P53420 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.53□□□□□ -1.52
COL4A4P53420 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.53□□□□□ -1.52
COL4A4P53420 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 AC006427.1-201ENST00000514359 712 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 HMGN1P9-201ENST00000515212 298 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 RN7SKP21-201ENST00000516503 220 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC027369.5-201ENST00000533838 755 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 TOMM20P2-201ENST00000540082 421 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.53□□□□□ -1.52
COL4A4P53420 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 AL512782.1-201ENST00000603093 364 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 AC099654.6-201ENST00000636487 512 ntBASIC5.53□□□□□ -1.52
COL4A4P53420 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL4A4P53420 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.52
COL4A4P53420 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.52□□□□□ -1.53
COL4A4P53420 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 AC007998.4-201ENST00000612496 2533 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 SAMM50P1-201ENST00000455403 1399 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
COL4A4P53420 RN7SKP27-201ENST00000410684 333 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.52□□□□□ -1.53
COL4A4P53420 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.52□□□□□ -1.53
COL4A4P53420 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 AC009963.4-201ENST00000448535 339 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 AC006967.1-201ENST00000467608 589 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 RPL7P41-201ENST00000485823 957 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 RPS12P31-201ENST00000491419 398 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 AC005412.2-201ENST00000492004 341 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 IGBP1P4-201ENST00000503202 879 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.52□□□□□ -1.53
COL4A4P53420 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.52□□□□□ -1.53
COL4A4P53420 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.52□□□□□ -1.53
COL4A4P53420 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 AC136624.4-201ENST00000573044 370 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 SS18L2P2-201ENST00000583960 235 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 AL359757.1-201ENST00000623176 255 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 AC016717.3-201ENST00000624730 554 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 AC068724.3-201ENST00000625906 87 ntBASIC5.52□□□□□ -1.53
COL4A4P53420 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
COL4A4P53420 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL4A4P53420 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL4A4P53420 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms