Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC073111.2-201ENST00000605657 1075 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC131238.1-201ENST00000617135 328 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AP001962.1-201ENST00000624114 559 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC010329.2-201ENST00000595195 2737 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 RN7SKP15-201ENST00000364742 309 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 RPL26P37-201ENST00000411983 438 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC079809.1-201ENST00000415468 276 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AL512504.1-201ENST00000415494 778 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 RPS7P3-201ENST00000443360 580 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AL162739.1-201ENST00000450606 307 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 RPL7AP52-201ENST00000458096 790 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 RN7SL197P-201ENST00000466981 299 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 PDCL3P4-201ENST00000489621 720 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC125612.1-201ENST00000547580 377 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC068305.2-201ENST00000550567 1205 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 MIR4660-201ENST00000583549 74 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC015982.1-201ENST00000608113 465 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 uc_338.26-201ENST00000612659 160 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AC005224.3-201ENST00000584683 2140 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AP001029.2-203ENST00000589795 4910 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VMP1Q96GC9 AP000756.2-201ENST00000624168 2567 ntBASIC5.54□□□□□ -1.52
VMP1Q96GC9 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AC090971.4-201ENST00000560291 1800 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VMP1Q96GC9 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
VMP1Q96GC9 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VMP1Q96GC9 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VMP1Q96GC9 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VMP1Q96GC9 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
VMP1Q96GC9 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 RNA5SP211-201ENST00000365516 117 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AL358178.1-201ENST00000407698 397 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 MIR1203-201ENST00000408812 85 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AL035660.1-201ENST00000422041 222 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 AC099336.2-201ENST00000422457 254 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 AL606490.7-201ENST00000433136 191 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.53□□□□□ -1.52
VMP1Q96GC9 NDUFS5P5-201ENST00000437256 321 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 CUBNP2-201ENST00000443534 1139 ntBASIC5.53□□□□□ -1.52
VMP1Q96GC9 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms