Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 RN7SKP269-201ENST00000365545 319 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SMARCA1P28370 RNU6-1000P-201ENST00000391066 106 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 RNA5SP178-201ENST00000410380 128 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 OR2AT2P-201ENST00000413438 905 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC092106.1-201ENST00000444291 373 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AL596266.1-201ENST00000448132 400 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
SMARCA1P28370 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC034244.2-201ENST00000514668 858 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AC067904.2-201ENST00000517322 1283 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.56□□□□□ -1.36
SMARCA1P28370 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC018926.1-201ENST00000616335 435 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AL645927.2-201ENST00000618350 349 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AC109809.1-201ENST00000619665 545 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AC004808.1-201ENST00000627671 721 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SMARCA1P28370 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.56□□□□□ -1.36
SMARCA1P28370 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.56□□□□□ -1.36
SMARCA1P28370 SRRM1P3-201ENST00000426911 2678 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 AC097063.1-201ENST00000426714 1797 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.56□□□□□ -1.36
SMARCA1P28370 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SMARCA1P28370 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 AC245100.2-201ENST00000454544 1679 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AC003985.2-201ENST00000562268 1669 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.55□□□□□ -1.36
SMARCA1P28370 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC232271.1-201ENST00000602455 2715 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SMARCA1P28370 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.55□□□□□ -1.36
SMARCA1P28370 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 AL391422.1-201ENST00000402155 436 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 RN7SKP286-201ENST00000410894 299 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC6.55□□□□□ -1.36
SMARCA1P28370 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SMARCA1P28370 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC006326.1-201ENST00000445465 787 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 RPL36AP39-201ENST00000445859 318 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AL450023.1-201ENST00000450868 751 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.55□□□□□ -1.36
SMARCA1P28370 SNORD125-201ENST00000459538 96 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 IGLV3-24-201ENST00000517477 197 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 C1DP5-201ENST00000525775 383 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 UBTFL9-201ENST00000534504 1148 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AC137627.1-201ENST00000545761 289 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC008126.1-201ENST00000549019 480 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AC067838.1-201ENST00000606064 577 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AC012213.4-201ENST00000606457 354 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AL592494.3-201ENST00000609485 464 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 RN7SL787P-201ENST00000613000 284 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AC097520.1-201ENST00000624435 385 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AL390318.1-201ENST00000624564 687 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 AC099654.8-201ENST00000637757 681 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 TMEM30CP-203ENST00000637814 1035 ntBASIC6.55□□□□□ -1.36
SMARCA1P28370 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SMARCA1P28370 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.55□□□□□ -1.36
SMARCA1P28370 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SMARCA1P28370 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SMARCA1P28370 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SMARCA1P28370 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms