Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 CDY11P-201ENST00000447168 1651 ntBASIC7□□□□□ -1.29
MSX1P28360 AC138627.1-203ENST00000641872 1680 ntBASIC7□□□□□ -1.29
MSX1P28360 ZNF577-201ENST00000301399 3074 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
MSX1P28360 AC074198.1-201ENST00000506546 1397 ntBASIC6.99□□□□□ -1.29
MSX1P28360 CDY2B-201ENST00000382867 1961 ntAPPRIS ALT1 BASIC6.99□□□□□ -1.29
MSX1P28360 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 AMYH02020865.1-201ENST00000621140 2591 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 FAM32BP-201ENST00000344033 333 ntBASIC6.99□□□□□ -1.29
MSX1P28360 RNU6-1122P-201ENST00000384449 107 ntBASIC6.99□□□□□ -1.29
MSX1P28360 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
MSX1P28360 SRI-202ENST00000394641 653 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 CREM-214ENST00000395887 849 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 RPL7-203ENST00000396466 762 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 PEX12P1-201ENST00000400284 1048 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AL122016.1-201ENST00000403365 367 ntBASIC6.99□□□□□ -1.29
MSX1P28360 BCRP8-201ENST00000412037 255 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 NCOR1P3-201ENST00000420479 303 ntBASIC6.99□□□□□ -1.29
MSX1P28360 PGAM1P3-201ENST00000420790 565 ntBASIC6.99□□□□□ -1.29
MSX1P28360 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 AL954705.1-201ENST00000435277 559 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 HMGB3P12-201ENST00000438745 556 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC108039.2-201ENST00000440214 359 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 AL031736.1-201ENST00000449688 618 ntBASIC6.99□□□□□ -1.29
MSX1P28360 TCEAL4P1-201ENST00000453620 588 ntBASIC6.99□□□□□ -1.29
MSX1P28360 RPL7P48-201ENST00000461513 746 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC130509.1-201ENST00000464158 433 ntBASIC6.99□□□□□ -1.29
MSX1P28360 RPL34P22-201ENST00000468193 318 ntBASIC6.99□□□□□ -1.29
MSX1P28360 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 RN7SL635P-201ENST00000492123 296 ntBASIC6.99□□□□□ -1.29
MSX1P28360 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 MTND5P4-201ENST00000514978 288 ntBASIC6.99□□□□□ -1.29
MSX1P28360 RNU6-1004P-201ENST00000516584 111 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC100823.2-201ENST00000518337 699 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 GSTM3-206ENST00000540225 678 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 AL845331.3-202ENST00000562856 261 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC6.99□□□□□ -1.29
MSX1P28360 AC138915.2-201ENST00000569776 97 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC016629.2-201ENST00000597341 199 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC005518.2-201ENST00000603254 282 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC007621.1-201ENST00000604544 437 ntBASIC6.99□□□□□ -1.29
MSX1P28360 FXYD6P1-201ENST00000604857 285 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AL096855.2-201ENST00000605785 369 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 AL391903.2-201ENST00000614532 247 ntBASIC6.99□□□□□ -1.29
MSX1P28360 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 AC129778.1-202ENST00000623812 261 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AL591379.1-207ENST00000635982 261 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AC099654.15-201ENST00000639802 509 ntBASIC6.99□□□□□ -1.29
MSX1P28360 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 GUCY2GP-201ENST00000479705 3222 ntBASIC6.99□□□□□ -1.29
MSX1P28360 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
MSX1P28360 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 PIWIL2-204ENST00000521356 3488 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC6.99□□□□□ -1.29
MSX1P28360 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.99□□□□□ -1.29
MSX1P28360 AC089998.1-201ENST00000548575 3141 ntBASIC6.98□□□□□ -1.29
MSX1P28360 ZNF101P1-201ENST00000435701 1720 ntBASIC6.98□□□□□ -1.29
MSX1P28360 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 MAPK10-347ENST00000641762 2856 ntBASIC6.98□□□□□ -1.29
MSX1P28360 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 MTND5P1-201ENST00000445440 1375 ntBASIC6.98□□□□□ -1.29
MSX1P28360 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 AC009220.2-201ENST00000489759 1751 ntBASIC6.98□□□□□ -1.29
MSX1P28360 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms