Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A3P25940 FABP7P1-201ENST00000424004 391 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 TXNP2-201ENST00000443918 295 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 MED28P3-201ENST00000444288 531 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 AC012512.1-201ENST00000446594 718 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 IGBP1P5-201ENST00000507524 1000 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 AP001804.1-201ENST00000526868 919 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A3P25940 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A3P25940 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL5A3P25940 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A3P25940 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.39□□□□□ -1.39
COL5A3P25940 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL5A3P25940 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
COL5A3P25940 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.39□□□□□ -1.39
COL5A3P25940 RNU4-25P-201ENST00000410569 230 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 RNA5SP345-201ENST00000410646 108 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 OR51B3P-201ENST00000412287 913 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 AC007064.3-201ENST00000422608 359 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A3P25940 NRBF2P3-201ENST00000432731 865 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 RPS12P31-201ENST00000491419 398 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 IGBP1P4-201ENST00000503202 879 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A3P25940 ENPP7P9-201ENST00000514456 627 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 RN7SKP248-201ENST00000516278 305 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.39□□□□□ -1.39
COL5A3P25940 SOX5P1-201ENST00000524155 1127 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 AC010632.3-201ENST00000611377 369 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 MIR6133-201ENST00000617057 108 ntBASIC6.39□□□□□ -1.39
COL5A3P25940 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.39□□□□□ -1.39
COL5A3P25940 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A3P25940 KARSP3-201ENST00000571212 1504 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.38□□□□□ -1.39
COL5A3P25940 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
COL5A3P25940 AL137100.1-201ENST00000556703 1620 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A3P25940 SNORA70.2-201ENST00000364506 135 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 RNA5SP479-201ENST00000364858 117 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL5A3P25940 RN7SKP106-201ENST00000410832 272 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 HYALP1-201ENST00000417674 1279 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 OR2B7P-201ENST00000429302 934 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.38□□□□□ -1.39
COL5A3P25940 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 AL161747.1-201ENST00000480068 358 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 AC116562.1-201ENST00000485355 781 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.38□□□□□ -1.39
COL5A3P25940 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.38□□□□□ -1.39
COL5A3P25940 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.38□□□□□ -1.39
COL5A3P25940 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.38□□□□□ -1.39
COL5A3P25940 RN7SKP276-201ENST00000516242 268 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 AC136624.4-201ENST00000573044 370 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.38□□□□□ -1.39
COL5A3P25940 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A3P25940 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A3P25940 AC012414.7-202ENST00000622705 1090 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 AC011944.2-201ENST00000624440 683 ntBASIC6.38□□□□□ -1.39
COL5A3P25940 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A3P25940 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A3P25940 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC6.38□□□□□ -1.39
COL5A3P25940 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.38□□□□□ -1.39
COL5A3P25940 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A3P25940 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL5A3P25940 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL5A3P25940 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL5A3P25940 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 AL031123.3-201ENST00000623345 1837 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.37□□□□□ -1.39
COL5A3P25940 RPL7AP28-201ENST00000464513 571 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 NIP7P2-201ENST00000485801 544 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 RN7SKP122-201ENST00000515923 296 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 OR8G5-201ENST00000524943 1041 ntBASIC6.37□□□□□ -1.39
COL5A3P25940 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.37□□□□□ -1.39
COL5A3P25940 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.37□□□□□ -1.39
COL5A3P25940 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.37□□□□□ -1.39
COL5A3P25940 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.37□□□□□ -1.39
COL5A3P25940 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms