Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AL049874.4-201ENST00000557593 255 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC009303.3-201ENST00000591103 736 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC079791.1-201ENST00000605356 973 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC109309.2-201ENST00000612597 332 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC073869.8-201ENST00000641806 335 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC004158.1-201ENST00000564508 4319 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 AC092451.3-201ENST00000625067 1343 ntBASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.19□□□□□ -1.58
ATG4BQ9Y4P1 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 RN7SKP124-201ENST00000364730 341 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 SNORA16A-201ENST00000384342 137 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AL391422.1-201ENST00000402155 436 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 RN7SKP229-201ENST00000410465 302 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 RNU2-22P-201ENST00000411266 212 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AL392003.1-201ENST00000434394 243 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AL356390.1-201ENST00000455684 397 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 ABCC13-202ENST00000463099 3842 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AP000769.2-201ENST00000602344 396 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC117490.2-201ENST00000610042 594 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC007786.3-201ENST00000615154 596 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC021766.1-201ENST00000624404 741 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
ATG4BQ9Y4P1 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 RN7SKP145-201ENST00000363291 303 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 RNA5SP132-201ENST00000364725 118 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 SNORA70.6-201ENST00000383934 134 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 SNORD56.6-201ENST00000384569 71 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 PPIAP9-201ENST00000403866 498 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 OR3A2-201ENST00000408891 1076 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 HMGB1P32-201ENST00000425971 565 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AC012075.1-201ENST00000436549 580 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 AC098583.1-201ENST00000480875 255 ntBASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
ATG4BQ9Y4P1 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms