Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL049737.1-201ENST00000413920 1403 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC010894.1-201ENST00000313760 361 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RNU4-27P-201ENST00000410889 139 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 UBE2V1P9-201ENST00000414760 368 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 NUP35P2-201ENST00000416748 943 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL513325.1-201ENST00000417716 1034 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 NIFKP3-201ENST00000417799 865 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 OR6C64P-201ENST00000419708 825 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL139415.2-201ENST00000431968 163 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 ZNF965P-201ENST00000432501 817 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC044797.1-201ENST00000445744 679 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL022237.1-201ENST00000446663 358 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 SNX18P26-201ENST00000458433 740 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RNU7-125P-201ENST00000458760 62 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RPL21P18-201ENST00000469899 480 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RPL21P131-201ENST00000497298 483 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC093325.1-201ENST00000508378 326 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 C1GALT1P1-201ENST00000548895 1089 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC092718.4-201ENST00000566639 716 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 PPIAP14-201ENST00000577627 496 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 SLC25A36P1-201ENST00000590111 465 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC100767.2-201ENST00000604840 693 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC019257.2-201ENST00000605539 497 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC007497.1-201ENST00000610421 561 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC024255.1-201ENST00000614376 102 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 MIR6883-201ENST00000614952 78 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL445649.1-201ENST00000615941 691 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC091059.2-201ENST00000623355 614 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 MTND4P16-201ENST00000466108 1367 ntBASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC39Q9UFE4 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 NLRP3P1-201ENST00000622303 1785 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RNA5SP308-201ENST00000362532 115 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RNU4-4P-201ENST00000364588 130 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 MTCO3P1-205ENST00000422088 832 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RPS24P1-201ENST00000438550 371 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ELOCP8-201ENST00000439309 332 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ELOCP15-201ENST00000442090 332 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AL445687.2-201ENST00000458156 728 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC008379.1-201ENST00000463655 464 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms