Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 AC010928.1-201ENST00000592477 1447 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 AC068733.2-201ENST00000605434 1418 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 OR9G4-201ENST00000302957 984 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 PPIAP21-201ENST00000464473 501 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 AC093827.1-201ENST00000480094 861 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 IMPA1P1-201ENST00000510718 842 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 RN7SKP260-201ENST00000516907 149 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 AC011487.3-201ENST00000593607 453 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 OR8B1P-202ENST00000641132 1178 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 AC015799.1-201ENST00000622996 3122 ntBASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SHANK3Q9BYB0 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 RNA5SP191-201ENST00000362585 102 ntBASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 GNG5P2-201ENST00000372054 207 ntBASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AL161722.2-201ENST00000434731 981 ntBASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 BNIP3P35-201ENST00000604530 490 ntBASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AC135068.12-201ENST00000637370 931 ntBASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
SHANK3Q9BYB0 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 IGKV1-32-201ENST00000519290 311 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 MIR4277-201ENST00000578298 84 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AP001357.1-201ENST00000586304 1053 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC125494.2-201ENST00000602431 657 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AL596275.2-208ENST00000641192 594 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC006210.2-201ENST00000367074 1545 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 U3.10-201ENST00000364459 214 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 SNORA37-201ENST00000384504 129 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 RNA5SP44-201ENST00000410446 133 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 RN7SKP263-201ENST00000411194 309 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 RPL7AP61-201ENST00000443410 636 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AL137845.2-201ENST00000444292 988 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC000111.2-201ENST00000448200 210 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 IGHV5-78-201ENST00000450948 295 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC012400.1-201ENST00000518452 381 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AL109766.1-201ENST00000555080 552 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 BGLT3-201ENST00000564523 994 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms