Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC026523.2-201ENST00000625039 7739 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 RN7SKP160-201ENST00000363804 340 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AL158827.1-201ENST00000416300 391 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 FTLP19-201ENST00000433300 394 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC138761.5-201ENST00000433967 325 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 SPRYD7P1-201ENST00000443861 570 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 RN7SL184P-201ENST00000488308 297 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 RN7SL547P-201ENST00000490793 290 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC108693.1-201ENST00000496068 432 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 HMGB1P44-201ENST00000508597 572 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 SUGT1P3-202ENST00000604259 383 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC000068.2-201ENST00000608816 460 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC079395.2-201ENST00000610982 737 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 PCAT14-202ENST00000627127 3935 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 NAMPTP1-201ENST00000440465 2514 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 CUL4AP1-201ENST00000514750 1863 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AL359715.3-201ENST00000569267 2123 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 SNORD56.6-201ENST00000384569 71 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC073465.2-201ENST00000440938 498 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC007386.1-201ENST00000455212 582 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC091912.1-201ENST00000511351 248 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 ATP5LP3-201ENST00000514223 304 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 RNU6-513P-201ENST00000516104 104 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC025423.2-201ENST00000537570 439 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AP005403.1-201ENST00000579720 229 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 WBP1LP8-201ENST00000617401 327 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 uc_338.7-201ENST00000621834 124 ntBASIC5.41□□□□□ -1.54
VPS35Q96QK1 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS35Q96QK1 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS35Q96QK1 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC104260.2-201ENST00000623551 3497 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms