Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 BRAFP1-201ENST00000445336 2703 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SKA3Q8IX90 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.86□□□□□ -1.63
SKA3Q8IX90 LINC01963-201ENST00000562038 3148 ntBASIC4.86□□□□□ -1.63
SKA3Q8IX90 AL353796.1-201ENST00000561542 3241 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 RN7SKP28-201ENST00000364770 305 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 SNORA70.6-201ENST00000383934 134 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 HYALP1-201ENST00000417674 1279 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 RPL7P56-201ENST00000429441 717 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC019185.1-201ENST00000442718 389 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC073909.1-201ENST00000447112 999 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 IGBP1P3-201ENST00000447449 1000 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 RN7SL188P-201ENST00000469842 285 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 NPM1P29-201ENST00000483112 803 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AP000926.3-201ENST00000497201 299 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 NRBF2P4-201ENST00000520874 850 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 MIR4310-201ENST00000582950 57 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AP005212.4-201ENST00000614206 710 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 AL122125.1-201ENST00000616999 600 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 REV3L-214ENST00000619481 969 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 ZNF652P1-201ENST00000442420 1309 ntBASIC4.85□□□□□ -1.63
SKA3Q8IX90 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SKA3Q8IX90 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SKA3Q8IX90 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 AP001642.1-201ENST00000624727 2117 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 KARSP1-201ENST00000451871 1752 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 SOCS5P3-201ENST00000425115 1576 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SKA3Q8IX90 RNU4-2-201ENST00000365668 141 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 SNORA17A-201ENST00000391185 133 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 RNA5SP178-201ENST00000410380 128 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AC002524.1-201ENST00000411687 547 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.84□□□□□ -1.63
SKA3Q8IX90 OR13Z1P-201ENST00000416141 834 ntBASIC4.84□□□□□ -1.63
SKA3Q8IX90 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms