Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 SGO1P1-201ENST00000603525 1447 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 MIR16-2-201ENST00000362117 81 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 RNU6-468P-201ENST00000384003 109 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 CXADRP1-201ENST00000398098 1095 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AL121978.1-201ENST00000402778 359 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 UBE2V1P11-201ENST00000411559 285 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 MYL6P5-201ENST00000412707 459 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC245060.4-201ENST00000413293 1121 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 TRGV6-201ENST00000417928 299 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 ARL2BPP3-201ENST00000421226 480 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 OSTCP5-201ENST00000425293 453 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 ARF4P4-201ENST00000439608 520 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 USP9YP25-201ENST00000457708 443 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 MTND4LP3-201ENST00000468320 276 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 PPP1R11P1-201ENST00000486095 376 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC005363.1-201ENST00000530779 351 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC084824.1-201ENST00000550917 1005 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 RPA2P1-201ENST00000556557 721 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC00556-201ENST00000569603 412 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC124283.4-201ENST00000581815 456 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AL499605.1-201ENST00000604628 403 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC069234.4-201ENST00000621276 412 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC012254.3-201ENST00000591183 2117 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VRK3Q8IV63 AC007998.4-201ENST00000612496 2533 ntBASIC5.84□□□□□ -1.47
VRK3Q8IV63 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.48
VRK3Q8IV63 AF287957.1-201ENST00000607368 1595 ntBASIC5.84□□□□□ -1.48
VRK3Q8IV63 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
VRK3Q8IV63 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.48
VRK3Q8IV63 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
VRK3Q8IV63 AL356473.1-201ENST00000406203 1408 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
VRK3Q8IV63 Z95114.1-201ENST00000624264 14574 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 AC093297.3-201ENST00000607056 2517 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VRK3Q8IV63 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VRK3Q8IV63 SELENOWP1-201ENST00000322792 252 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 TMSB4XP2-201ENST00000335179 210 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 RNA5SP273-201ENST00000362484 113 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 RNU5B-4P-201ENST00000363508 111 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 RNA5SP211-201ENST00000365516 117 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 VN1R12P-201ENST00000403778 876 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
VRK3Q8IV63 RNU2-18P-201ENST00000411224 162 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 BTF3L4P1-201ENST00000413813 468 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VRK3Q8IV63 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC5.83□□□□□ -1.48
VRK3Q8IV63 FO393414.1-201ENST00000428697 1184 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 AL365396.1-201ENST00000430854 671 ntBASIC5.83□□□□□ -1.48
VRK3Q8IV63 AL365220.1-201ENST00000432923 399 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms