Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.55□□□□□ -1.68
LMO4P61968 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
LMO4P61968 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
LMO4P61968 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
LMO4P61968 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LMO4P61968 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 SELE-204ENST00000367776 3576 ntTSL 5 BASIC4.54□□□□□ -1.68
LMO4P61968 SELE-205ENST00000367777 3576 ntTSL 5 BASIC4.54□□□□□ -1.68
LMO4P61968 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
LMO4P61968 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 U3.2-201ENST00000362981 210 ntBASIC4.54□□□□□ -1.68
LMO4P61968 SNORA72.3-201ENST00000365074 132 ntBASIC4.54□□□□□ -1.68
LMO4P61968 DHFRP5-201ENST00000406944 564 ntBASIC4.54□□□□□ -1.68
LMO4P61968 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 AC005033.1-201ENST00000428904 813 ntBASIC4.54□□□□□ -1.68
LMO4P61968 FAM96AP1-201ENST00000430879 482 ntBASIC4.54□□□□□ -1.68
LMO4P61968 MTND1P26-201ENST00000440488 538 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AL158053.1-201ENST00000441503 453 ntBASIC4.54□□□□□ -1.68
LMO4P61968 SBDSP1-204ENST00000453858 737 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.54□□□□□ -1.68
LMO4P61968 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC4.54□□□□□ -1.68
LMO4P61968 HMGB1P44-201ENST00000508597 572 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.54□□□□□ -1.68
LMO4P61968 MTND6P2-201ENST00000512226 524 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC010374.2-201ENST00000512933 535 ntBASIC4.54□□□□□ -1.68
LMO4P61968 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.54□□□□□ -1.68
LMO4P61968 HMGB1P40-201ENST00000525121 540 ntBASIC4.54□□□□□ -1.68
LMO4P61968 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.54□□□□□ -1.68
LMO4P61968 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.54□□□□□ -1.68
LMO4P61968 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.54□□□□□ -1.68
LMO4P61968 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 HMGN2P47-201ENST00000559378 272 ntBASIC4.54□□□□□ -1.68
LMO4P61968 NPM1P42-201ENST00000560329 862 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC009268.1-201ENST00000561352 1203 ntBASIC4.54□□□□□ -1.68
LMO4P61968 RBM22P1-201ENST00000578589 1214 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.54□□□□□ -1.68
LMO4P61968 AP005403.1-201ENST00000579720 229 ntBASIC4.54□□□□□ -1.68
LMO4P61968 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 MIR4433B-201ENST00000581329 102 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.54□□□□□ -1.68
LMO4P61968 AC126915.2-201ENST00000610957 190 ntBASIC4.54□□□□□ -1.68
LMO4P61968 AC109583.2-201ENST00000617367 129 ntBASIC4.54□□□□□ -1.68
LMO4P61968 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 AC079776.5-201ENST00000641920 211 ntBASIC4.54□□□□□ -1.68
LMO4P61968 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
LMO4P61968 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.54□□□□□ -1.68
LMO4P61968 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LMO4P61968 HSPD1P7-201ENST00000447985 1686 ntBASIC4.54□□□□□ -1.68
LMO4P61968 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LMO4P61968 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 AL158152.1-201ENST00000602652 1435 ntBASIC4.54□□□□□ -1.68
LMO4P61968 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LMO4P61968 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC4.53□□□□□ -1.68
LMO4P61968 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMO4P61968 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.53□□□□□ -1.68
LMO4P61968 AC005225.5-201ENST00000623547 2225 ntBASIC4.53□□□□□ -1.68
LMO4P61968 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
LMO4P61968 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMO4P61968 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC4.53□□□□□ -1.68
LMO4P61968 AC239868.2-201ENST00000564237 4527 ntBASIC4.53□□□□□ -1.68
LMO4P61968 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMO4P61968 AC144833.1-201ENST00000567953 4089 ntBASIC4.53□□□□□ -1.68
LMO4P61968 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMO4P61968 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMO4P61968 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.53□□□□□ -1.68
LMO4P61968 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LMO4P61968 RNU6-891P-201ENST00000384280 111 ntBASIC4.53□□□□□ -1.68
LMO4P61968 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.53□□□□□ -1.68
LMO4P61968 RNU4-64P-201ENST00000410795 131 ntBASIC4.53□□□□□ -1.68
LMO4P61968 RPL23AP27-201ENST00000415161 451 ntBASIC4.53□□□□□ -1.68
LMO4P61968 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMO4P61968 AC108075.1-201ENST00000424692 529 ntBASIC4.53□□□□□ -1.68
LMO4P61968 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC4.53□□□□□ -1.68
LMO4P61968 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.53□□□□□ -1.68
LMO4P61968 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.53□□□□□ -1.68
LMO4P61968 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.53□□□□□ -1.68
LMO4P61968 RAD1P2-201ENST00000446414 663 ntBASIC4.53□□□□□ -1.68
LMO4P61968 FAR2P1-206ENST00000449736 709 ntBASIC4.53□□□□□ -1.68
LMO4P61968 AL672138.1-201ENST00000450604 1015 ntBASIC4.53□□□□□ -1.68
LMO4P61968 AURKAPS1-201ENST00000451805 1212 ntBASIC4.53□□□□□ -1.68
LMO4P61968 AL035090.1-201ENST00000454835 332 ntBASIC4.53□□□□□ -1.68
LMO4P61968 C1DP3-201ENST00000455013 423 ntBASIC4.53□□□□□ -1.68
LMO4P61968 RN7SL610P-201ENST00000463845 291 ntBASIC4.53□□□□□ -1.68
LMO4P61968 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.53□□□□□ -1.68
LMO4P61968 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms