Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.2□□□□□ -1.58
PKNOX1P55347 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.2□□□□□ -1.58
PKNOX1P55347 EEF1B2P6-201ENST00000445713 673 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.2□□□□□ -1.58
PKNOX1P55347 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.2□□□□□ -1.58
PKNOX1P55347 AC079168.1-201ENST00000458741 345 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 AC093827.1-201ENST00000480094 861 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 RN7SL273P-201ENST00000481561 299 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PKNOX1P55347 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.2□□□□□ -1.58
PKNOX1P55347 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PKNOX1P55347 RN7SKP99-201ENST00000517028 307 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 AC078878.1-201ENST00000539832 958 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.2□□□□□ -1.58
PKNOX1P55347 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.2□□□□□ -1.58
PKNOX1P55347 AC132068.1-201ENST00000623805 459 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 CU639417.4-201ENST00000623928 207 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PKNOX1P55347 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
PKNOX1P55347 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
PKNOX1P55347 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PKNOX1P55347 NAMPTP1-201ENST00000440465 2514 ntBASIC5.2□□□□□ -1.58
PKNOX1P55347 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
PKNOX1P55347 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
PKNOX1P55347 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.19□□□□□ -1.58
PKNOX1P55347 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.19□□□□□ -1.58
PKNOX1P55347 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 VN1R12P-201ENST00000403778 876 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 RN7SKP240-201ENST00000410583 375 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 CBX1P3-201ENST00000413296 527 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 SRSF1P1-201ENST00000424058 520 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 AC244033.1-201ENST00000426826 870 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 GSTM5P1-201ENST00000434751 660 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PKNOX1P55347 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 VN1R96P-201ENST00000446052 858 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 AC012512.1-201ENST00000446594 718 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 GAPDHP25-201ENST00000447061 1001 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 AC105399.1-202ENST00000447303 205 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.19□□□□□ -1.58
PKNOX1P55347 SEPT7P3-201ENST00000455017 621 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.19□□□□□ -1.58
PKNOX1P55347 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.19□□□□□ -1.58
PKNOX1P55347 AC138866.2-201ENST00000508650 584 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.19□□□□□ -1.58
PKNOX1P55347 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 AC060766.1-201ENST00000590824 627 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.19□□□□□ -1.58
PKNOX1P55347 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.19□□□□□ -1.58
PKNOX1P55347 MIR6071-201ENST00000616741 78 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.19□□□□□ -1.58
PKNOX1P55347 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
PKNOX1P55347 SMG1P4-204ENST00000523028 4131 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 AC008079.2-201ENST00000623543 20396 ntBASIC5.19□□□□□ -1.58
PKNOX1P55347 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
PKNOX1P55347 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PKNOX1P55347 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 CASC19-255ENST00000641733 1385 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 AL353796.1-201ENST00000561542 3241 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 AC005294.1-201ENST00000355509 281 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.18□□□□□ -1.58
PKNOX1P55347 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 SNORA16A-201ENST00000384342 137 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 RNA5SP122-201ENST00000384457 108 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.18□□□□□ -1.58
PKNOX1P55347 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PKNOX1P55347 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PKNOX1P55347 AC115283.1-201ENST00000427353 400 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.18□□□□□ -1.58
PKNOX1P55347 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.18□□□□□ -1.58
PKNOX1P55347 RPL7P41-201ENST00000485823 957 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 RN7SL814P-201ENST00000487715 300 ntBASIC5.18□□□□□ -1.58
PKNOX1P55347 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.18□□□□□ -1.58
PKNOX1P55347 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.18□□□□□ -1.58
PKNOX1P55347 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms