Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.7□□□□□ -1.34
COL18A1P39060 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.7□□□□□ -1.34
COL18A1P39060 RN7SL443P-201ENST00000464331 290 ntBASIC6.7□□□□□ -1.34
COL18A1P39060 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.7□□□□□ -1.34
COL18A1P39060 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.7□□□□□ -1.34
COL18A1P39060 AC098976.1-201ENST00000513014 541 ntBASIC6.7□□□□□ -1.34
COL18A1P39060 AP001804.1-201ENST00000526868 919 ntBASIC6.7□□□□□ -1.34
COL18A1P39060 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.7□□□□□ -1.34
COL18A1P39060 AL138960.1-201ENST00000613838 513 ntBASIC6.7□□□□□ -1.34
COL18A1P39060 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.7□□□□□ -1.34
COL18A1P39060 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.7□□□□□ -1.34
COL18A1P39060 AC123769.2-201ENST00000624332 5984 ntBASIC6.7□□□□□ -1.34
COL18A1P39060 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
COL18A1P39060 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
COL18A1P39060 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.7□□□□□ -1.34
COL18A1P39060 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 AC007064.3-201ENST00000422608 359 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.69□□□□□ -1.34
COL18A1P39060 OR2B7P-201ENST00000429302 934 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 AC005154.2-201ENST00000438110 379 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 MTCYBP21-201ENST00000443300 1113 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 SLC25A18P1-201ENST00000449385 454 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 AL161747.1-201ENST00000480068 358 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 AP002981.1-201ENST00000517692 975 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 AC012339.2-201ENST00000523996 453 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 AL110118.1-201ENST00000553543 400 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL18A1P39060 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.69□□□□□ -1.34
COL18A1P39060 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC6.69□□□□□ -1.34
COL18A1P39060 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.69□□□□□ -1.34
COL18A1P39060 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.69□□□□□ -1.34
COL18A1P39060 KARSP3-201ENST00000571212 1504 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.69□□□□□ -1.34
COL18A1P39060 SNORA70.2-201ENST00000364506 135 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.69□□□□□ -1.34
COL18A1P39060 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL18A1P39060 HYALP1-201ENST00000417674 1279 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 NRBF2P3-201ENST00000432731 865 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 RN7SL441P-201ENST00000492388 296 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.69□□□□□ -1.34
COL18A1P39060 RN7SKP276-201ENST00000516242 268 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 RN7SKP21-201ENST00000516503 220 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.69□□□□□ -1.34
COL18A1P39060 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
COL18A1P39060 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.69□□□□□ -1.34
COL18A1P39060 MIR4277-201ENST00000578298 84 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL18A1P39060 AC004158.1-201ENST00000564508 4319 ntBASIC6.69□□□□□ -1.34
COL18A1P39060 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.68□□□□□ -1.34
COL18A1P39060 AL592148.3-201ENST00000608771 2646 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 CASC19-243ENST00000641588 1546 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC6.68□□□□□ -1.34
COL18A1P39060 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
COL18A1P39060 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 RNA5SP345-201ENST00000410646 108 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 AF186996.5-201ENST00000418098 904 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 MRPS21P2-201ENST00000424704 264 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.68□□□□□ -1.34
COL18A1P39060 AC090804.1-201ENST00000448870 490 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 RN7SL319P-201ENST00000480656 221 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 AC233699.1-201ENST00000569955 1168 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 AP000919.1-201ENST00000582850 985 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 AC016717.3-201ENST00000624730 554 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 OR52H1-202ENST00000641796 1061 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 UG0898H09-202ENST00000623646 7040 ntBASIC6.68□□□□□ -1.34
COL18A1P39060 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
COL18A1P39060 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.68□□□□□ -1.34
COL18A1P39060 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL18A1P39060 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.68□□□□□ -1.34
COL18A1P39060 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.68□□□□□ -1.34
COL18A1P39060 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.68□□□□□ -1.34
COL18A1P39060 NBPF8-201ENST00000583271 5330 ntBASIC6.67□□□□□ -1.34
COL18A1P39060 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL18A1P39060 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms