Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL121820.1-201ENST00000556919 461 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 AL391646.1-201ENST00000603860 190 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC012488.1-201ENST00000611221 640 ntBASIC7.01□□□□□ -1.29
MSX1P28360 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 AC087893.2-201ENST00000623272 255 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AL049541.2-201ENST00000626377 555 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AL138924.1-201ENST00000629067 415 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 AC016582.3-206ENST00000636547 207 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC183089.2-201ENST00000637931 916 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC068860.1-201ENST00000623701 3736 ntBASIC7.01□□□□□ -1.29
MSX1P28360 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 MAPK10-290ENST00000641237 2826 ntBASIC7.01□□□□□ -1.29
MSX1P28360 SEM1-215ENST00000615352 2637 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 AC016582.1-202ENST00000636341 2982 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC016831.3-201ENST00000446451 1723 ntBASIC7.01□□□□□ -1.29
MSX1P28360 MAK-202ENST00000354489 3941 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 AC061975.7-201ENST00000592016 2692 ntBASIC7.01□□□□□ -1.29
MSX1P28360 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
MSX1P28360 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 AC110998.1-201ENST00000519029 2053 ntBASIC7□□□□□ -1.29
MSX1P28360 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 AC093297.3-201ENST00000607056 2517 ntBASIC7□□□□□ -1.29
MSX1P28360 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7□□□□□ -1.29
MSX1P28360 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 LIN9-205ENST00000481685 1916 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC7□□□□□ -1.29
MSX1P28360 RNU6-619P-201ENST00000365146 108 ntBASIC7□□□□□ -1.29
MSX1P28360 RNU6-533P-201ENST00000384144 107 ntBASIC7□□□□□ -1.29
MSX1P28360 RNU6-1160P-201ENST00000384546 104 ntBASIC7□□□□□ -1.29
MSX1P28360 MIR555-201ENST00000384987 96 ntBASIC7□□□□□ -1.29
MSX1P28360 RNU6-244P-201ENST00000391028 104 ntBASIC7□□□□□ -1.29
MSX1P28360 AC092952.1-201ENST00000397646 1209 ntBASIC7□□□□□ -1.29
MSX1P28360 DNAJA1P4-201ENST00000406473 1166 ntBASIC7□□□□□ -1.29
MSX1P28360 RN7SKP129-201ENST00000410288 299 ntBASIC7□□□□□ -1.29
MSX1P28360 AC009237.9-201ENST00000414800 347 ntBASIC7□□□□□ -1.29
MSX1P28360 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC7□□□□□ -1.29
MSX1P28360 AL161631.1-201ENST00000417933 486 ntBASIC7□□□□□ -1.29
MSX1P28360 AC093084.1-201ENST00000424233 687 ntBASIC7□□□□□ -1.29
MSX1P28360 RIMKLBP2-201ENST00000424737 654 ntBASIC7□□□□□ -1.29
MSX1P28360 FTH1P5-201ENST00000425761 545 ntBASIC7□□□□□ -1.29
MSX1P28360 KLF7-IT1-201ENST00000428777 655 ntTSL 2 BASIC7□□□□□ -1.29
MSX1P28360 AC009299.1-201ENST00000429684 717 ntBASIC7□□□□□ -1.29
MSX1P28360 AL513175.1-201ENST00000431492 780 ntBASIC7□□□□□ -1.29
MSX1P28360 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC7□□□□□ -1.29
MSX1P28360 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC7□□□□□ -1.29
MSX1P28360 RPSAP40-201ENST00000442343 891 ntBASIC7□□□□□ -1.29
MSX1P28360 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC7□□□□□ -1.29
MSX1P28360 AC110749.1-201ENST00000462007 357 ntBASIC7□□□□□ -1.29
MSX1P28360 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC7□□□□□ -1.29
MSX1P28360 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC7□□□□□ -1.29
MSX1P28360 HMGB1P28-201ENST00000507778 552 ntBASIC7□□□□□ -1.29
MSX1P28360 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC7□□□□□ -1.29
MSX1P28360 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC7□□□□□ -1.29
MSX1P28360 AC117383.2-201ENST00000514722 322 ntBASIC7□□□□□ -1.29
MSX1P28360 AP004607.5-201ENST00000532034 217 ntBASIC7□□□□□ -1.29
MSX1P28360 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC7□□□□□ -1.29
MSX1P28360 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC7□□□□□ -1.29
MSX1P28360 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC7□□□□□ -1.29
MSX1P28360 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC7□□□□□ -1.29
MSX1P28360 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC7□□□□□ -1.29
MSX1P28360 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC7□□□□□ -1.29
MSX1P28360 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC7□□□□□ -1.29
MSX1P28360 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC7□□□□□ -1.29
MSX1P28360 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 ZNF322P1-201ENST00000568013 1209 ntBASIC7□□□□□ -1.29
MSX1P28360 NRBF2P1-201ENST00000587407 859 ntBASIC7□□□□□ -1.29
MSX1P28360 AC090241.1-201ENST00000587732 621 ntBASIC7□□□□□ -1.29
MSX1P28360 AC006116.10-201ENST00000591836 581 ntBASIC7□□□□□ -1.29
MSX1P28360 SLFN5-203ENST00000592325 1225 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 PRR13P5-201ENST00000596581 442 ntBASIC7□□□□□ -1.29
MSX1P28360 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC7□□□□□ -1.29
MSX1P28360 AC023206.1-201ENST00000605824 298 ntBASIC7□□□□□ -1.29
MSX1P28360 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC7□□□□□ -1.29
MSX1P28360 RMST_3.1-201ENST00000611651 109 ntBASIC7□□□□□ -1.29
MSX1P28360 Metazoa_SRP.27-201ENST00000617573 258 ntBASIC7□□□□□ -1.29
MSX1P28360 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7□□□□□ -1.29
MSX1P28360 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC7□□□□□ -1.29
MSX1P28360 HSPD1P1-201ENST00000503199 1726 ntBASIC7□□□□□ -1.29
MSX1P28360 ERVFRD-1-202ENST00000542862 3184 ntAPPRIS P1 BASIC7□□□□□ -1.29
MSX1P28360 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7□□□□□ -1.29
MSX1P28360 TPD52-213ENST00000520527 2638 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 UGT2B26P-201ENST00000508672 1613 ntBASIC7□□□□□ -1.29
MSX1P28360 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 B3GALT5-202ENST00000380618 2763 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC7□□□□□ -1.29
MSX1P28360 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms