Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 AC006206.1-201ENST00000544842 3387 ntBASIC5.48□□□□□ -1.53
MSH3P20585 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
MSH3P20585 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 Z93019.1-201ENST00000416450 973 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AL513325.1-201ENST00000417716 1034 ntBASIC5.48□□□□□ -1.53
MSH3P20585 RPL7P56-201ENST00000429441 717 ntBASIC5.48□□□□□ -1.53
MSH3P20585 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 AL391987.1-201ENST00000441025 200 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 AC092106.1-201ENST00000444291 373 ntBASIC5.48□□□□□ -1.53
MSH3P20585 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 AC023141.9-201ENST00000458734 412 ntBASIC5.48□□□□□ -1.53
MSH3P20585 RN7SL51P-201ENST00000468230 285 ntBASIC5.48□□□□□ -1.53
MSH3P20585 RN7SL583P-201ENST00000475692 287 ntBASIC5.48□□□□□ -1.53
MSH3P20585 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 OR2A3P-201ENST00000493774 953 ntBASIC5.48□□□□□ -1.53
MSH3P20585 COL6A4P2-205ENST00000509855 506 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.48□□□□□ -1.53
MSH3P20585 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 AL731537.2-201ENST00000561565 951 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AC015720.2-201ENST00000567709 334 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AC019322.1-201ENST00000571869 389 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AC020978.7-201ENST00000575953 1187 ntBASIC5.48□□□□□ -1.53
MSH3P20585 SNORD95-201ENST00000579879 68 ntBASIC5.48□□□□□ -1.53
MSH3P20585 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 AC022387.2-201ENST00000604050 448 ntBASIC5.48□□□□□ -1.53
MSH3P20585 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.48□□□□□ -1.53
MSH3P20585 AC021766.1-201ENST00000624404 741 ntBASIC5.48□□□□□ -1.53
MSH3P20585 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 AC091948.2-201ENST00000636510 279 ntBASIC5.48□□□□□ -1.53
MSH3P20585 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
MSH3P20585 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.48□□□□□ -1.53
MSH3P20585 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.48□□□□□ -1.53
MSH3P20585 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSH3P20585 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
MSH3P20585 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
MSH3P20585 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
MSH3P20585 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 RNA5SP319-201ENST00000362768 119 ntBASIC5.47□□□□□ -1.53
MSH3P20585 RNA5SP242-201ENST00000364171 118 ntBASIC5.47□□□□□ -1.53
MSH3P20585 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 AC007161.1-204ENST00000423039 460 ntBASIC5.47□□□□□ -1.53
MSH3P20585 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.47□□□□□ -1.53
MSH3P20585 AC019185.1-201ENST00000442718 389 ntBASIC5.47□□□□□ -1.53
MSH3P20585 RN7SL174P-201ENST00000475578 289 ntBASIC5.47□□□□□ -1.53
MSH3P20585 RN7SL466P-201ENST00000497546 295 ntBASIC5.47□□□□□ -1.53
MSH3P20585 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.47□□□□□ -1.53
MSH3P20585 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.47□□□□□ -1.53
MSH3P20585 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.47□□□□□ -1.53
MSH3P20585 AC020937.1-201ENST00000519677 1013 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AC026688.1-201ENST00000520639 1168 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.47□□□□□ -1.53
MSH3P20585 AC011270.1-201ENST00000558606 583 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AC012146.2-201ENST00000576545 416 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AC027216.1-201ENST00000577726 685 ntBASIC5.47□□□□□ -1.53
MSH3P20585 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.47□□□□□ -1.53
MSH3P20585 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.47□□□□□ -1.53
MSH3P20585 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.47□□□□□ -1.53
MSH3P20585 AL589674.2-201ENST00000604304 337 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AL713998.2-201ENST00000604538 1198 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AC005014.3-201ENST00000605985 190 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AL356094.1-201ENST00000624663 1212 ntBASIC5.47□□□□□ -1.53
MSH3P20585 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.47□□□□□ -1.53
MSH3P20585 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
MSH3P20585 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms