Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AC090948.2-201ENST00000607363 564 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AC092821.2-201ENST00000545710 2042 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 GLRA2-201ENST00000218075 3216 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 SMG1P7-201ENST00000565246 2704 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 OR4K17-201ENST00000315543 1032 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AL451136.1-201ENST00000435399 325 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AC011742.2-201ENST00000443818 352 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 TCEA1P1-201ENST00000449716 880 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 RPS17P2-201ENST00000461663 408 ntBASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 PRICKLE1-213ENST00000639589 5761 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS13AQ96RL7 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC4.96□□□□□ -1.61
VPS13AQ96RL7 OFD1P17-201ENST00000437639 3018 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
VPS13AQ96RL7 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS13AQ96RL7 AL590240.1-201ENST00000334118 313 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
VPS13AQ96RL7 AF186996.5-201ENST00000418098 904 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 RPS17P5-201ENST00000498293 408 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 AC010350.1-201ENST00000504908 231 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 PMS2P3-207ENST00000529061 717 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.96□□□□□ -1.61
VPS13AQ96RL7 MIR3939-201ENST00000582614 106 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 AC115286.1-201ENST00000604298 434 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 RAD17P1-201ENST00000418130 2042 ntBASIC4.96□□□□□ -1.61
VPS13AQ96RL7 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AC114755.5-201ENST00000447760 831 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AC005191.1-201ENST00000603950 358 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 MIR6075-201ENST00000620782 95 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AL450345.1-202ENST00000605741 3881 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 SPATA13-201ENST00000343003 6405 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 LINC02334-201ENST00000617568 4959 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AL353748.1-201ENST00000440753 474 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 OR7E125P-201ENST00000443450 846 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 RPL7P19-201ENST00000469948 618 ntBASIC4.96□□□□□ -1.62
VPS13AQ96RL7 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS13AQ96RL7 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 PRKG1-204ENST00000373985 6487 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 RNU1-74P-201ENST00000384108 171 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC114755.2-201ENST00000413520 361 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 FTH1P10-202ENST00000430907 550 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC026726.1-201ENST00000512859 601 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC020910.3-201ENST00000603701 874 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC099676.1-201ENST00000608886 657 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms