Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MPEG1-201ENST00000361050 4442 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GAPDHP24-201ENST00000328713 983 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RNA5SP427-201ENST00000365323 119 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ARMCX7P-201ENST00000372828 562 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GAPDHP42-201ENST00000406848 981 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AP000534.2-201ENST00000412729 568 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 SMARCE1P1-201ENST00000417747 1186 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GEMIN2P2-201ENST00000418195 715 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RPL7P30-201ENST00000420888 709 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 HSPD1P12-201ENST00000429127 1069 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 OSTCP2-201ENST00000437956 444 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GTF2F2P2-201ENST00000445825 721 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC098824.1-201ENST00000453565 980 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 SNRPFP4-201ENST00000456366 242 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 snoU109.1-201ENST00000459339 135 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RPL21P71-201ENST00000465598 459 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC010301.1-201ENST00000473936 355 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AP005202.1-201ENST00000489915 867 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC105252.1-201ENST00000503089 286 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC114981.1-201ENST00000503897 678 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC021678.1-201ENST00000505195 936 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 EIF3KP1-201ENST00000513279 656 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AP004247.1-201ENST00000531556 1289 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC068631.3-201ENST00000538831 225 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC124947.2-202ENST00000552735 133 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC006960.3-201ENST00000561845 705 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC243312.1-201ENST00000570582 275 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MIR4258-201ENST00000580920 91 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC015801.1-201ENST00000585651 153 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ELOCP28-201ENST00000590044 317 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 DYNLL1P1-201ENST00000595442 269 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC011451.2-201ENST00000604303 598 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC008385.1-201ENST00000604421 355 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC131902.3-201ENST00000611767 581 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MIR6726-201ENST00000613751 61 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 HTR1DP1-201ENST00000616500 888 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC005899.7-201ENST00000618199 588 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 CR381653.2-201ENST00000624041 768 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AL136298.2-201ENST00000556497 1570 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC079097.1-201ENST00000512187 1399 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC125238.2-201ENST00000430003 1440 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms