Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IGKV1OR1-1-201ENST00000613775 347 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AL031658.2-201ENST00000616850 651 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AL355974.3-201ENST00000617383 467 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC243756.2-201ENST00000618406 463 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC090527.3-201ENST00000619041 548 ntBASIC7.02□□□□□ -1.29
MSX1P28360 PART1_3.1-201ENST00000619680 131 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC091905.1-201ENST00000624400 311 ntBASIC7.02□□□□□ -1.29
MSX1P28360 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 PISRT1-201ENST00000626175 531 ntBASIC7.02□□□□□ -1.29
MSX1P28360 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 AL353795.1-201ENST00000439134 1775 ntBASIC7.02□□□□□ -1.29
MSX1P28360 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 CASP10-201ENST00000272879 2073 ntTSL 2 BASIC7.02□□□□□ -1.29
MSX1P28360 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 AC110716.2-201ENST00000563865 3945 ntBASIC7.02□□□□□ -1.29
MSX1P28360 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 GABRB3-225ENST00000638099 2752 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 AC145138.1-201ENST00000512908 2851 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC7.02□□□□□ -1.29
MSX1P28360 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 EEF1A1P42-201ENST00000613436 1331 ntBASIC7.01□□□□□ -1.29
MSX1P28360 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 RHOJ-201ENST00000316754 3302 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 RRN3-203ENST00000429751 2198 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 OR2A3P-202ENST00000641249 1776 ntBASIC7.01□□□□□ -1.29
MSX1P28360 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 ZNF736P3Y-201ENST00000428264 1465 ntBASIC7.01□□□□□ -1.29
MSX1P28360 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
MSX1P28360 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 OR5D18-201ENST00000333976 991 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
MSX1P28360 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 RNY4P34-201ENST00000364779 95 ntBASIC7.01□□□□□ -1.29
MSX1P28360 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 CBWD5-205ENST00000377395 1143 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 MIR431-201ENST00000385266 114 ntBASIC7.01□□□□□ -1.29
MSX1P28360 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 OR4K12P-201ENST00000406538 961 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC211486.3-201ENST00000412694 621 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 EIF1P3-201ENST00000423841 334 ntBASIC7.01□□□□□ -1.29
MSX1P28360 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
MSX1P28360 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 IPO7P1-201ENST00000442031 636 ntBASIC7.01□□□□□ -1.29
MSX1P28360 BRK1P2-201ENST00000442875 223 ntBASIC7.01□□□□□ -1.29
MSX1P28360 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
MSX1P28360 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 RPL23AP20-201ENST00000447965 421 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 BX248409.1-201ENST00000455497 255 ntBASIC7.01□□□□□ -1.29
MSX1P28360 RN7SL36P-201ENST00000469345 276 ntBASIC7.01□□□□□ -1.29
MSX1P28360 RN7SL414P-201ENST00000469545 294 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC096741.1-201ENST00000472250 846 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC135999.1-201ENST00000478962 479 ntBASIC7.01□□□□□ -1.29
MSX1P28360 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 AC084871.2-201ENST00000503355 464 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC7.01□□□□□ -1.29
MSX1P28360 AC106774.2-201ENST00000510266 406 ntBASIC7.01□□□□□ -1.29
MSX1P28360 OR7E83P-201ENST00000511021 970 ntBASIC7.01□□□□□ -1.29
MSX1P28360 NPM1P21-201ENST00000513394 762 ntBASIC7.01□□□□□ -1.29
MSX1P28360 RNU6-277P-201ENST00000516272 106 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC7.01□□□□□ -1.29
MSX1P28360 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC7.01□□□□□ -1.29
MSX1P28360 TRMT10BP1-201ENST00000519377 943 ntBASIC7.01□□□□□ -1.29
MSX1P28360 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.01□□□□□ -1.29
MSX1P28360 AP005597.4-201ENST00000526762 229 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC068305.2-201ENST00000550567 1205 ntBASIC7.01□□□□□ -1.29
MSX1P28360 CHCHD3P2-201ENST00000550751 639 ntBASIC7.01□□□□□ -1.29
MSX1P28360 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC7.01□□□□□ -1.29
MSX1P28360 COX4I1P1-201ENST00000554239 509 ntBASIC7.01□□□□□ -1.29
MSX1P28360 RPL21P5-201ENST00000554662 472 ntBASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms