Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 SPATA31C1-201ENST00000420021 3895 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 SNORA77-201ENST00000408716 125 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AL451062.2-201ENST00000427515 271 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC006946.1-201ENST00000429106 328 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC124944.2-201ENST00000429866 1242 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 RPL7P41-201ENST00000485823 957 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 MRPS33P2-201ENST00000507850 322 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC008033.2-201ENST00000542626 177 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC091042.1-201ENST00000579213 173 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 RPL26P30-202ENST00000602923 645 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AL034374.2-201ENST00000605281 548 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AL359757.1-201ENST00000623176 255 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 AC067931.1-201ENST00000624190 671 ntBASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.75□□□□□ -1.33
SHANK3Q9BYB0 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 MIR600-201ENST00000385007 98 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 RPL11P3-201ENST00000395256 523 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AL050305.1-201ENST00000399993 1230 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 GTF2IP5-201ENST00000414608 731 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC004074.1-201ENST00000421810 1063 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 TAAR4P-201ENST00000454843 1039 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 SEPT10P1-201ENST00000517342 1162 ntBASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SHANK3Q9BYB0 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 RNU2-50P-201ENST00000410494 143 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 NRBF2P2-201ENST00000413087 861 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 TXNP5-201ENST00000441043 315 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 HMGN2P25-201ENST00000486956 268 ntBASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SHANK3Q9BYB0 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms