Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AL031601.1-201ENST00000605702 394 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 uc_338.29-201ENST00000615099 168 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC107308.1-201ENST00000615897 301 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC015914.2-201ENST00000618167 288 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 MIR6839-201ENST00000620425 113 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AL513548.1-201ENST00000562904 1724 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 TET1P1-201ENST00000426627 2301 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC004817.4-201ENST00000602396 3625 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 OR9G4-201ENST00000302957 984 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AKR1B10P1-201ENST00000425765 942 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC104843.2-201ENST00000427666 297 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC124944.2-201ENST00000429866 1242 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC090018.1-201ENST00000434369 367 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AL356121.1-201ENST00000442911 156 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC090589.1-201ENST00000473109 362 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC087672.1-201ENST00000479876 766 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 NENFP3-201ENST00000503735 313 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 HMGB3P16-201ENST00000508037 287 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AP000769.2-201ENST00000602344 396 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AP001437.1-201ENST00000608783 456 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AC109583.2-201ENST00000617367 129 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AP000648.2-201ENST00000624182 404 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 CASC19-221ENST00000641309 1382 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 NEAT1-202ENST00000501122 22743 ntBASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC28BQ9BUN5 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 RNU1-150P-201ENST00000362491 162 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC013442.1-201ENST00000397347 228 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 DBIP1-201ENST00000401435 260 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 RN7SKP125-201ENST00000410481 302 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 CBX1P3-201ENST00000413296 527 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC244033.1-201ENST00000426826 870 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 BX119321.1-201ENST00000428912 797 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 NDUFS5P5-201ENST00000437256 321 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC011225.1-201ENST00000457751 369 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 RPL29P23-201ENST00000486188 442 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC109464.1-201ENST00000511091 819 ntBASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC28BQ9BUN5 RNU6-751P-201ENST00000516382 101 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms