Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC008521.2-201ENST00000591021 259 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL355802.4-201ENST00000607635 548 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC108673.3-201ENST00000609183 335 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL365181.4-201ENST00000609800 547 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC093909.5-201ENST00000621839 1799 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 RNU4-39P-201ENST00000362455 127 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 CCNB2P1-201ENST00000399411 1150 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 HMGN1P20-201ENST00000411849 300 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 SEPT7P8-201ENST00000413308 775 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 VN1R21P-201ENST00000426703 765 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AL359265.1-201ENST00000440296 795 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 MTND2P25-201ENST00000449028 610 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC005077.1-201ENST00000449226 375 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 MTND5P8-201ENST00000449817 1083 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC144530.1-201ENST00000452862 555 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 RPL12P24-201ENST00000474907 486 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 RN7SL57P-201ENST00000493687 290 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 RPS17P5-201ENST00000498293 408 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 LSM3P4-201ENST00000502948 309 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 SUMO2P4-201ENST00000504193 276 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 PCNAP1-201ENST00000505363 709 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC025458.1-201ENST00000506046 166 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 SETP12-201ENST00000514068 805 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 RNU6-491P-201ENST00000516099 110 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 IGLV3-24-201ENST00000517477 197 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 HSPE1P2-201ENST00000554777 306 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC007956.1-201ENST00000555623 542 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC092868.3-201ENST00000560515 784 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 OR4H6P-202ENST00000603819 340 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC067838.1-201ENST00000606064 577 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 AL450345.1-202ENST00000605741 3881 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 HSPD1P7-201ENST00000447985 1686 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 OR10AB1P-202ENST00000641219 1686 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.88□□□□□ -1.63
NKX3-1Q99801 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NKX3-1Q99801 EEF1A1P30-201ENST00000429708 1315 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 AC117409.1-201ENST00000470499 1310 ntBASIC4.88□□□□□ -1.63
NKX3-1Q99801 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms