Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 OR6C72P-201ENST00000451403 892 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL358876.1-201ENST00000453364 1075 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 UBFD1P1-201ENST00000473259 814 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 RN7SL583P-201ENST00000475692 287 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 PFN1P8-201ENST00000497012 543 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 SNORD116-30-201ENST00000516468 85 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AC060775.1-201ENST00000518241 520 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 MRPS16P1-201ENST00000523462 412 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL499605.1-201ENST00000604628 403 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AC004241.3-201ENST00000611728 517 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AC025574.2-201ENST00000615621 514 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 RN7SL544P-201ENST00000617232 284 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 RN7SL763P-201ENST00000620922 284 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL022322.2-201ENST00000624072 20397 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 VPS35P1-201ENST00000563400 1518 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS39Q96JC1 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS39Q96JC1 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS39Q96JC1 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS39Q96JC1 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS39Q96JC1 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS39Q96JC1 MIR621-201ENST00000384919 96 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 RNA5SP105-201ENST00000391123 113 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 OR7E156P-201ENST00000400303 464 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 PPIAP9-201ENST00000403866 498 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 RMRPP5-201ENST00000411156 267 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC079809.1-201ENST00000415468 276 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 Z84478.1-201ENST00000438230 1219 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 NPM1P39-201ENST00000449818 867 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 HNRNPRP2-201ENST00000528421 743 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 IGBP1P1-201ENST00000554337 1009 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC134669.1-201ENST00000581275 672 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC124856.1-201ENST00000600819 896 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AL138895.2-201ENST00000603019 178 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC067773.1-201ENST00000603284 1094 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AF117829.2-201ENST00000619538 361 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AP001005.3-201ENST00000622049 129 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 AC003973.3-201ENST00000624863 2822 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS39Q96JC1 HSPA8P17-201ENST00000427029 1382 ntBASIC5.52□□□□□ -1.53
VPS39Q96JC1 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS39Q96JC1 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
VPS39Q96JC1 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC100757.1-201ENST00000616872 1835 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 STX3-208ENST00000641815 3236 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 MIR375-201ENST00000362103 64 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 RN7SKP69-201ENST00000365390 305 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC245060.4-201ENST00000413293 1121 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC066692.1-201ENST00000421721 457 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 CBX1P2-201ENST00000453841 458 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 TRIM77BP-201ENST00000524985 1119 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC027216.1-201ENST00000577726 685 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 AP001496.3-201ENST00000580230 913 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms