Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC034229.5-201ENST00000624258 185 ntBASIC3.14□□□□□ -1.91
HSPG2P98160 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC3.14□□□□□ -1.91
HSPG2P98160 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HSPG2P98160 ZNF423-203ENST00000561648 7907 ntAPPRIS P3 TSL 5 BASIC3.14□□□□□ -1.91
HSPG2P98160 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 AL391262.1-201ENST00000556558 1992 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 RAD17P1-201ENST00000418130 2042 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 COL4A4-201ENST00000396625 9895 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 AC107980.1-201ENST00000558671 3355 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 OR4K17-201ENST00000315543 1032 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 AC041039.1-201ENST00000485656 536 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC3.13□□□□□ -1.91
HSPG2P98160 HNRNPRP2-201ENST00000528421 743 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 AP000619.2-201ENST00000546014 969 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC3.13□□□□□ -1.91
HSPG2P98160 AP003400.3-201ENST00000624904 346 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
HSPG2P98160 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 GPR107-202ENST00000372406 7353 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 MSL3P1-202ENST00000440028 1468 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 GMFG-202ENST00000594700 397 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 AC120338.1-201ENST00000625074 1541 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 AL008638.3-201ENST00000623027 5182 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 GAS7-204ENST00000437099 8003 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 AC010733.2-201ENST00000589496 5702 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC3.13□□□□□ -1.91
HSPG2P98160 RPL23AP56-201ENST00000460778 453 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 OR4A2P-201ENST00000527276 913 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC3.13□□□□□ -1.91
HSPG2P98160 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC3.13□□□□□ -1.91
HSPG2P98160 AF131215.7-201ENST00000602443 707 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 RNA5SP196-201ENST00000625967 102 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 ADAMTS4-202ENST00000367996 9773 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC3.13□□□□□ -1.91
HSPG2P98160 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 AL359715.3-201ENST00000569267 2123 ntBASIC3.13□□□□□ -1.91
HSPG2P98160 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC3.13□□□□□ -1.91
HSPG2P98160 ZNF236-201ENST00000253159 8124 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC3.13□□□□□ -1.91
HSPG2P98160 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC3.12□□□□□ -1.91
HSPG2P98160 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 RNA5SP397-201ENST00000391323 118 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 SNORA77-201ENST00000408716 125 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC010350.1-201ENST00000504908 231 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.12□□□□□ -1.91
HSPG2P98160 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 NEK3-211ENST00000629912 141 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 NSF-206ENST00000575068 2667 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 AC006210.2-201ENST00000367074 1545 ntBASIC3.12□□□□□ -1.91
HSPG2P98160 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HSPG2P98160 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC3.12□□□□□ -1.91
HSPG2P98160 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HSPG2P98160 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms